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https://github.com/obophenotype/upheno/blob/master/src/patterns/dosdp-dev/abnormallyIncreasedFunctionalityOfAnatomicalEntityInLocation.yaml
Thanks for opinions.
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Type of the examples and tags are wrong in the dosdp chema. `list` should be changed to `array`.
CI should validate dosdp schema before merge.
```yaml
examples:
type: list
items: { …
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https://github.com/obophenotype/upheno/blob/master/src/patterns/dosdp-dev/absenceOfAnatomicalEntity.yaml
The variable is 'entity' but I think this should be restricted to 'anatomical entity', becau…
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- match current nuclear subtype or mito subtype pattern, results in TSV (DOSDP query)
- delete existing logical definitions
- generate from TSV the new logical definitions with the correct pattern …
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Based on pattern used in
Tan, Shawn Zheng Kai, Huseyin Kir, Brian D. Aevermann, Tom Gillespie, Nomi Harris, Michael J. Hawrylycz, Nikolas L. Jorstad, et al. 2023. “Brain Data Standards - A Method …
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@matentzn we have this pattern for cell motility that is for cellular components:
https://github.com/obophenotype/upheno/blob/master/src/patterns/dosdp-dev/abnormalMotilityOfCellularComponent.yaml
…
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Ideally, I thought that given this:
```
annotations:
- annotationProperty: exact_synonym
text: "ultrasonography of %s"
vars:
- location
```
In my DOSDP pattern, I can simply…
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I don't think this is correct:
https://github.com/obophenotype/chiro/blob/master/patterns/biologicalRole_modulatorOf_x.yaml
The way to test is run through dosdp-tools query, to generate TSV. May…
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Manually authored README:
https://github.com/monarch-initiative/mondo/blob/master/src/patterns/README.md
- [x] all links are broken
Auto-generated docs, all in one page:
https://github.com…
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One problem I continuously stumble over now with the new data pipelines for some of the organisms is the problem of **novel ids**. I think we need to be able to leave the defined_class column in the D…