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* **What are you trying to do?**
* **If you've tried running this with BrainSpace code already, how did you do so and what went wrong?**
* **Please tell us about your computing environment…
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Hello, I think SimNIBS is a very useful and comprehensive tool. But I have a problem when using the dwi2cond command to get the conductivity file of dwi data. The specific error is as follows. The dwi…
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Can you confirm if CNN masking can be performed on dwi images in the PA direction (b=0)?
I seem to get really weird results when running this on PA images - the output is only a single slice in th…
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The goal of this branch is to incorporate and simplify the code from https://github.com/uhussai7/HippoDiffusion.
Note that many steps are redundant since HippoDiffusion was built off an earlier ver…
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DWI preprocessing has been a TODO in this repo for a while. Mrtrix3's combination of denoising and FSL preprocessing should still be used even when lacking RPE.
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Moved this from #1216
We collect ex-vivo diffusion data on our mice and we have some older datasets from when I first started work in rodent imaging. It's 3D diffusion acquisitions and one of the c…
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[BEP016](https://github.com/bids-standard/bids-bep016/blob/bep-016/src/05-derivatives/05-diffusion-derivatives.md) seems to recommend the model be specified as "suffix" (e.g bs, csd, or tensor)
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In general, these sequences look very nice. I am not an MRI physicist, so take my comments with a grain of salt. On the other hand, as a user, I really appreciate these well documented sequences. I ha…
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I'm wondering about the following thing:
- on line 275, the DWI image is cropped (the output is `"${file_dwi}"_crop.nii.gz`)
- but then, on line 277, motion correction is done on the original, non-…
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Hello,
I am running the dwi-preprocessing-using-t1 pipeline on some ADNI data. I have been receiving the following error which causes the pipeline to crash:
"OSError: Number of DWIs, b-vals and b-ve…