-
Kindly comment on this issue why you are interested in this mini-project
-
Should short reads from metagenomic data be mapped to those genes (or protein) (>90% identity for blastx or diamond blastx for example) that were found in the database to calculate relative abundance…
-
https://spaam-community.slack.com/archives/C0183TC8B0R/p1667987904955569
-
Use cases:
- Storage (long-term)
- Storage (short-term)
- Streaming
- Random access
- By class
- By genomic range
Metrics:
- Compression ratio
- Compression speed
- Decompression speed…
voges updated
3 years ago
-
Cross reference to #672. Create ``ecosystem`` terms to represent the GOLD/EBI-mgnify ``root > Environmental > Air`` classes:
```
root > Environmental > Air
root > Environmental > Air > Indoor Air…
-
### What is the title of the roadmap you are submitting?
Roadmap to Bioinformatics
### Roadmap Link
# Bioinformatics Roadmap
**0. Why Bioinformatics?**
- **What is Bioinformatics?** Bioinfo…
-
Links to metaproteomic public repositories
IDEA:
It would be a good idea to add a few common publically available metaproteomics databases (see HOMD database for an example below) to the Protein…
-
## Curated
+ HumanMetagenomeDB
+ Description: HumanMetagenomeDB version 1.0 contains metadata of 69 822 metagenomes. We standardized 203 attributes, based on standardized ontologies, describing …
-
### Problem Description
We are currently decontaminating the short reads using `bbduk.sh`. Would it make sense to decontaminate the long reads as well?
### Problem Solution
I've seen certain …
-
### Deep Learning Simplified Repository (Proposing new issue)
:red_circle: **Project Title** : Understanding Microbial Interactions Using Graph Neural Networks
:red_circle: **Aim** : The aim of thi…