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Hi, it appears that I am encountering an issue while training a model on the syn-balanced and enzymes datasets.
In both cases, the training process seems to be running indefinitely, and the outputs…
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Currently xiFDR can only export a single standard predefined enzymes to mzIdentML. If something else is used (e.g. multiple enzymes) xiFDR will just offer to pick a standard enzyme from a given list.
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Exploration Clearer visualization of relationships between structures & biosynthetic enzymes/pathways
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Hi,
for a new version of qc3C it would be nice to support the 4-emzyme cocktail of the Arima High coverage Hi-C kit. At the moment only max. 2 enzymes are supported.
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Hello,
Thank you for your software and its quick processing.
I have a question regarding generating a .hic contact matrix with fragment resolution. As shown in the attached figure, the .hic file…
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Sandbox to allow me to upload a list of structure from my glycomics data to report back which enzymes likely play a role
Evalutation tasks for 2.6, we will also talk with Rebecka
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Enzymes are becoming more common as science progresses, and many are carried by homebrew shops and produced by popular labs like lallemand, white yeast labs, wyeast etc.
Need to be added as an opt…
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Hi, thank you for the great program.
Do you have any recommendations, advice, or considerations for using mHi-C with Hi-C datasets generated with the _in situ_ DNase Hi-C protocol (which uses DNa…
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There are issues with parsing the json files which lead to at least one BRITE term being part of the KEGG term search without returning expected results.
`01000 Enzymes [BR:ko01000] ` is a BRITE ter…
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Is this a good idea? What are the implications of opensource biotech enzymes? Lets really think about the broader impact of this project / get some different perspectives on it...