-
I am running emapper.py on a cluster, and I tried to run a test on one .faa. I have exported the data dir to EGGNOG_DATA_DIR="/storage/scratch/eggnog_db". I ran the test using the following command (s…
-
Related to #379. Basically merge apex/apex into apex/up and improve some things along the way. With monetization and a single codebase it'll be easier to maintain, and if done right hopefully easier t…
-
Hi developer,
thank you for this nice tool! I wonder does it limit the size of faa file for input?
when I enter a long sequence, it turned out error like:OSError: [Errno 36] File name too long:
How…
-
Hi, thanks for this.
I'm running this on a bunch of *.faa files using this command:
```
for input_file in "$input_directory"/*.faa; do
if [[ -f "$input_file" ]]; then
filename=$(b…
-
I would expect to be able to serve
```python
import pandas as pd
import panel as pn
from panel_gwalker import GraphicWalker
pn.extension(sizing_mode="stretch_width")
LOGO = "https://kana…
-
I have tried to fix this but looks like funannotate compare needs .faa files that doesnt recognise even when I place them in the same directory
/pangenome_out# more funannotate-compare.log
[08/22/…
-
This is more of an experimental thing about whether we could make ssh_scan_api a server-less function.
What would it take?
- Re-writing the API as a Lambda service
- Hosting the Data storage co…
-
OpenFaaS will soon become a major part of this project. We all need to train up a bit on this. It shouldn't require more than a couple of hours to get our heads around the basic stuff. The initial lea…
-
The convention indicates that, based on the `faas.trigger`, it should adhere to the corresponding semantic convention but the [faas span semantic](https://github.com/open-telemetry/semantic-convention…
-
**Is your feature request related to a problem? Please describe.**
MSF relies on the order of the protein sequences in the faa files to identify systems. However, sometimes the proteins files downloa…