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First off, thank you for this amazing tool!
We are high school students from the Broad Summer Scholars Program using rMATS. We are excited to learn from your RMATS software whether changes in exon…
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line 52, in load_data
df = fdr.StockListing(market)
line 355, in raw_decode
raise JSONDecodeError("Expecting value", s, err.value) from None
json.decoder.JSONDecodeError: Expecting value:…
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Dear MicrobiomeStat developer,
I have a question regarding the false discovery rate (FDR) correction.
I see on the documentation that the linda() function already takes into account FDR. However,…
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I noticed that the results from running pGlyco2.1 on the data from https://www.nature.com/articles/s41467-017-00535-2 are different from the published results. The actual match scores are the same, bu…
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Update FDR to rely on the default branch instead of master (if possible).
If not, take main first and then master if main doesn't exist. If this last solution is used, once done, create a task to de…
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Hello there,
I hope all is going well on your side, and that you are having a great day!
I stumbled across your pipeline FLARE while encountering an issue with SAILOR. In the issue, it mentioned…
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The article I came across that utilized MTAG left me feeling very puzzled about whether I used the MTAG is correct.
1. As per my understanding, if I were to employ MTAG to simultaneously input fo…
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I am interested to know why the FDR values outputted in both the ping_pong_signatures and tranposons files are grouped and not unique for each individual signature. For example one results file has 24…
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I am trying to use "fdr" correction over multiple models, ie. tab_model(m1,m2,m3, p.adjust= "fdr"). Is FDR correction being applied to each model separately, or is it being applied to each IV individ…
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What are the Type of FDR corrections
availables at the Alphapeptstats? Benjamini Hochberg?
Thank you