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Hi Fritz,
Is there any possibility to get counts of specific tandem duplications? I m interested in a few genes where I find Tandem Duplications but I would like to know how many times that duplica…
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The following annotations would be really useful for the non-redundant variants:
- overlap with genes
- repeat regions and segmental duplication regions
- overlap with known dosage sensitive gene…
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Hi, can this package see the effect of a duplication in the chek2 gene of about 1500 nt? thank you
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Phenomena like whole genome duplications are major factors for driving new speciation
![images](https://user-images.githubusercontent.com/6511937/90300578-1dbbca00-de69-11ea-85e3-c8d660e00b85.jpeg)…
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When a gene product has a paralog,
we need some way of linking the orthologs
Implement count column for orthologs and paralogs
Example
YJR066W matches both Tor1 and Tor2
But you don't know …
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Hi dear Seaver?
I’m a Ph.D. student in France on Brassica napus (rapeseed) specialized metabolites against pathogens.
I want to apply your tool on my Brassica napus transcriptome to annotate tra…
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@cebos found that the output from Concatenator includes both the full genes and the genes subsetted by codon position. Not sure if this is the desired behaviour? PartitionFinder only wants the codon p…
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Hi,
I want to run OrthoFinder from the Gene Trees step onwards. The reason is that I am only interested in the duplication history of a subset of orthogroups. However the default of OrthoFinder is …
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I'd like to be able to visualize all the direct annotations to any member of a gene ortholog set. Currently, I can search for a gene, such as this search:
http://amigo.geneontology.org/amigo/search/bi…
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Dear Rhodes,
I have used the quartetTreeTestInd model and plotted the results using quartetTestPlot. However, I don't know how to explain the results.
Some papers interpreted the results as:
'W…