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Hey all!
I read your bioRxiv on "Benchmarking algorithms for gene regulatory network inferencefrom single-cell transcriptomic data" and was quite intrigued. I've been toying around with various fo…
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Here I will be posting discussion posts that promote computational methods for traversing, reconstructing, and identifying signaling pathways and interaction networks within a biological setting. This…
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We need to pull a series of data to inform which genes to look for variants in.
There is a[ google doc here](https://docs.google.com/spreadsheets/d/1yX-5sfrC3vrahf4_k7-5rl4Oqzm853ollIMmUo1PTc0/edit…
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Hello,
I am trying to run the grn step on a large dataset of 263159 cells and 14357 genes on an HPC cluster with 999 GB of memory and 16 cores. I tried increasing the cores, but it would cause memo…
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Hi,
missing ATAC components include:
- [ ] ATAC-specific QC metrics (TSS, nucleosome_signal,...) see https://www.sc-best-practices.org/chromatin_accessibility/quality_control.html#calculatin…
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My Dataset is Like this...
**SNP**
![image](https://user-images.githubusercontent.com/37298751/94503365-3d545980-0241-11eb-9a7b-0411ac7b1b8e.png)
**Gene Expression**
![image](https://user-im…
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[Essential] system size - data size relationship analysis
- why
- question is indeed too hard
- too many/few time points for each trajectory
- only config level limit, better fine-tuning c…
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This is an awesome tool, thank you!
I have a suspicion, that with one addition this could be turing-complete (I don't have proof, just gut feeling). Also, this feature would help people to mirror a…
ghost updated
4 years ago
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**Have you checked the [list of proposed rules](https://github.com/Benjamin-Lee/deep-rules/issues?q=is%3Aissue+is%3Aopen+label%3Arule) to see if the rule has already been proposed?**
- [x] Yes
…
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Hi
I'm interested in producing dendrograms, heatmaps, network plots (force directed network plots) and hierarchical edge bundle plots using the final merged members of each module.
From what I'v…