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Hi Steffi,
could you please install ANNOVAR (Annovar: Functional annotation of genetic variants from high-throughput sequencing data)
Thank you, Maria
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Hi !
I try to run the SHAPEIT4 with a multisample .vcf from WES via docker:
`docker run -v /Users/shapeit:/shapeit lifebitai/shapeit4 shapeit4 --input /shapeit/out.recode.vcf.gz --map /shapeit/…
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In the future, I want to map the resequencing data of different species of onto my map genome.Then the group vcf with good classification is used to carry out the process of vgmpmap
I wonder if this …
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Currently, the project lacks a script to generate ACMG (American College of Medical Genetics and Genomics) and ComPerMed (Comprehensive Personalized Medicine) classifications for genetic variants. Thi…
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Slides:
[Annotation of genetic variants using ANNOVAR.pptx](https://github.com/WGLab/-BAIFW_2019_class-/files/3934308/Annotation.of.genetic.variants.using.ANNOVAR.pptx)
Example VCF file:
[exampl…
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Dear all,
I'm testing the GenoPred pipeline on my own target file, obtained using plink1.
I worked with GRCh37 reference genome version to get the plink1 files, however the pipeline is stopped bec…
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Title: Genetic Variants of SARS-CoV-2—What Do They Mean?
# General Information
## Please paste a link to the paper or a citation here:
Link: https://jamanetwork.com/journals/jama/fullarticl…
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Hi,
I have two sumstats, before doing genetic correlation, I have intersected the SNPs of the two data and generated the sumstats.gz files. When I do rg, it reports this error:
./ldsc.py \
--ref-…
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@mari-ga and @wxicu please modify the section on minimum required inputs following this:
The hashing and genetic mode are two independent workflows, and the rescue mode allows to perform joint demu…
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Some wild ideas to explore
1. add genetic association to disease pages
2. add phenotype associations to disease pages - first, query HPO terms for diseases and add them to the Wikidata page of the d…