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Dear bakta team,
We ran bakta on several bacterial genomes, with >50% estimated compl. and
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Hi, I found a new error!
```
from LingerGRN.preprocess import *
Datadir='/home/baldini/sc/tbx1-2022/python_analysis/LINGER/'# This directory should be the same as Datadir defined in the above 'Down…
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### Description of the bug
unzipping of fasta and gtf files fail, when I provide a relative path to those files. I can work around by either unzipping the file first, or by providing an absolute path…
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Hello, I would like to inquire about the input data format. When preparing the config.SFs file, I observed that it is possible to input non-chromosomal data. Consequently, I prepared two datasets.
Th…
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Hello! I want to use this tool to analysis the super enhancer in the plant tissue, but it needs to input a reference genome following the -g parameter. The problem is that the genomes covered by the s…
hcph updated
2 months ago
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Hello,
I'm getting an error when trying to run croo after a successful run of the encode rna-seq-pipeline. My version of croo is 0.6.0
The command I ran is
`croo /storage/aadams/scripts/encode…
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I was just wondering if anyone knew which GTF file I should be using for my AS analysis.
I'm using mapped BAM files that I've aligned to a Glycine max reference genome.
However, If I'm doing alterna…
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Hi,
I using QTLSeqr for BSA analysis for the wheat genome. I have the vcf file generated using Freebayes. also have the column names as required by the program. While executing the runQTLseqAnalys…
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Hi, the software seems very good, but I am new in metagenome analysis and I have questions about the selection of appropriate reference genomes (indexes) when using 'hostile'.
1.
I read the "Refe…
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I know there has been a thread about this in the past: https://github.com/trinityrnaseq/trinityrnaseq/issues/1231
but there seems to me to be an issue that isn't clearly resolved or explained.
We …