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Request a new SBO term to be used for confidence scores.
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@HAHerrmann a new issue seemed more fitting.
> I have been using the ACHR sampler using cobra both in Matlab and Python. In Python when plotting the flux distributions it is obvious that the sample…
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Hi, StrainDesign has worked very well for me when used on basic stoichiometric genome-scale models (e.g. iML1515). However, I am encountering problems when I try to use it on an enzyme-constrained mod…
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_From @olgabot on July 6, 2014 22:55_
Hi @jbenet and @maxogden! Thank you so much for the time you took to meet with @mlovci and me this weekend. Here's an overview of our current data management sit…
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We can use this issue to propose and discuss potential ideas for simulations to address interesting scientific questions.
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Dear Andrey Zamaraev,
I will try to stay short (at least I tried). I am a biology PhD student working on topics in evolutionary and theoretical biology. I was just thinking on a project to try out …
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Hi Daniel,
I am trying to carve around 3000 genomes I obtained from a complete metagenomics dataset.
I was able to carve most of them, but the last ~150 are giving me a hard time.
Below is the ou…
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Configuration file: db_main.toml
Description: miRDB is an online database for miRNA target prediction and functional annotations.
```toml
[db_mirdb]
source_url = "http://mirdb.org/download/miRDB…
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### Background
Technological advancements in the determination of complete genomic sequences and their annotation, and the well-explored biochemistry of metabolic transformations have facilitated the…