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Thank you for the wonderful tool! When I want to make my own GRN, get error. My network can't download ref_genome so
I manual download https://hgdownload.soe.ucsc.edu/goldenPath/mm39/bigZips/mm39.fa…
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In the script of genomeScan.r, appears the requiring of a txt file to get the end position of the chromosome. But I have no idea of what it's looks like. The script concerning this issue is attached b…
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Hello Joana / Mark
I came across your excellent tutorial on analyzing speciationgenomics .
I am recently practising with a dataset you used in the course ,there seems to be some missing data files.
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attribute of protocol
Tasks:
- [ ] scan for "reference_genome" parameter values of "mapping" protocols
- [ ] assign genome build to immediate downstream file nodes
Pivotal Tracker story 40988237 (Nil…
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Hello,
Thank you for developing the tool.
I can see my issue is similar to [#20](https://github.com/bcgsc/straglr/issues/20), but I don't have patch sequences in my reference genome.
Could y…
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I see for CRISPREessoWGS you need to specify an interval in which the analysis is run on. I'm wondering if CRISPresso can be run on the entire genome (entire WGS data)?
Thanks!
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@han16 I was asked by @linnanqia offline who has fixed bug in her code and got what seems encouraging results (log(BF) about 5 for some genes that seems to make sense). However in [our tutorial](https…
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Hello,
First thank you for your work. I would like to test your tool on other sub-families of transposable elements so I'm trying to follow the instructions but I have some questions.
I have a …
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Hello! First, thank you for this tool - it's been quite helpful to me in the past! However, as of about a month ago the NCBICDD1000 tool has stopped working for larger genomes, even genomes I've annot…
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Placeholder for work to look for genome regions under recent selection, esp. due to insecticides.
N.B., this probably not possible using conventional scanning metrics like h12 or IHS due to extreme …