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### Description of the bug
I know it is still work in progress, but the new version of this pipeline `https://github.com/nf-core/rnavar/tree/dev` seems really promising. However, it only takes the fi…
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I actually found out about Squash through the page at http://jdlm.info/articles/2017/05/01/compression-pareto-docker-gnuplot.html and realized that the genomics dataset that is used for those tests wo…
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Folks occasionally but consistently ask for this information on the forum and our current answer is that we provide these files as is. For the new GATK4 documentation, which we plan on releasing on Ja…
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## Background
The GA4GH has defined an API in the schemas which provides interfaces to the common genomic data types. The data types are meant to be accessed over an HTTP API, and Ensembl, EBI, and U…
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### URL of existing content (a rendered, sciwiki.fredhutch.org link)
https://github.com/FredHutch/wiki/blob/main/_scicomputing/store_posix.md#special-note-for-shared-resources-genomics-data
### …
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Loh et al argue for the idea of [compressive genomics](https://www.nature.com/articles/nbt.2241) and follow up with ideas of [Compressive acceleration](https://dl.acm.org/doi/10.1145/2957324).
The…
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Compare `raredisease`. To solve https://github.com/Clinical-Genomics/scout/issues/1619 Balsamic could produce d4 files and we could "load" these by giving their filenames in the case load config as `d…
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[Genomics Lessons](https://datacarpentry.org/genomics-workshop/)
- [x] Project organisation
- [x] Introduction to Linux
- [x] Introduction to HPC and cloud computing
- [x] Git and GitHub
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Hello,
I have 2 10X Genomics datasets (BCR and GEX). What are the appropriate parameters setting for TRUST4?
I'm using
f"run-trust4 -1 {f1} -2 {f2} --barcode {f1} --UMI {f1} --readFormat bc:0:15,…
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As a clinical geneticist at KGG `cust002`, I would like cases I order with `priority` or `express` status to be immediately more visible than cases ordered on routine priority in Scout. See https://gi…