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Mainly MIP VCFs and their indexes are being saved in Housekeeper with the same tags:
We have in Hermes specific tags for index files that are currently not used for MIP:
https://github.com/Cli…
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I was just wondering if you plan to release (or have already released?) the genomics/DNA pre-trained models that are mentioned in your paper?
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Hello, I have the error when running guidance = scglue.genomics.rna_anchored_guidance_graph(rna, atac) when using my dataset.
![image](https://github.com/gao-lab/GLUE/assets/72248550/d5b383e5-5efe-…
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### Operating System
Other Linux (please specify below)
### Other Linux
Red Hat Enterprise Linux release 8.6
### Workflow Version
v.1.2.1
### Workflow Execution
Command line (Cluster)
### Othe…
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## Background
The GA4GH has defined an API in the schemas which provides interfaces to the common genomic data types. The data types are meant to be accessed over an HTTP API, and Ensembl, EBI, and U…
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I actually found out about Squash through the page at http://jdlm.info/articles/2017/05/01/compression-pareto-docker-gnuplot.html and realized that the genomics dataset that is used for those tests wo…
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Dear Dev,
I am new user of TRUST4 on single cell TCR seq analysis, regardless, TCR seq could be successfully obtained using bulk RNAseq data.
I wonder, with my 3' 10x genomics GEX data (I have b…
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[Genomics Lessons](https://datacarpentry.org/genomics-workshop/)
- [x] Project organisation
- [x] Introduction to Linux
- [x] Introduction to HPC and cloud computing
- [x] Git and GitHub
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docker is very useful to rebuild the environment and whole configuration so I want to apply it to our genomics-workspace.
reference : 1. https://github.com/twtrubiks/docker-tutorial
…
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Do you have an example script for training the genomics model? I am attempting to apply this approach more broadly, and am starting by trying to replicate your example, but my weights are not correct.…