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I am trying to use Seurat to analyse a Nanostring CosMx dataset. I followed the seurat tutorial at this link:
https://satijalab.org/seurat/articles/seurat5_spatial_vignette_2#human-lung-nanostring-co…
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geom_labelvline and geom_labelhline are very useful tools for setting baselines/thresholds and annotating them. In the case of the vertical line options it seems like it would be appealing to be able …
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I'm trying to insert a textbox on a map with a paragraph but I don't want the lines broken with "\n" in between the text except for a new paragraph. How do I achieve this with tmap, tm_credit or any o…
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Main problem: Nodes appear in order of data frame under some conditions (such as symmetric flows) but under unknown conditions (some asymmetric flows, but not all), they appear out of order according …
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Dear Edward,
I am trying to run bayes space version ‘1.8.2’ with visium ST data (from Cytassist). When I run
spatialCluster(se_filtered, q=8, platform="Visium", d=7, nit.method="mclust", model="…
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Hello,
is it possible to print or show the APA score in the heatmap? Another question is what the u Contacts is? Is it the normalized contact value?
Best,
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_this is a course draft, no dates are fixed yet but this will change soon, comments are welcome_
## Do-Not-Repeat-Yourself
In this 3 parts hacky hours we will learn how to get from raw data to inform…
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I saw that there is already a vertical ridgeline geom. I was hoping that one for vertical density ridgelines could be provided as well :)
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We need to include some very simple mapping in the procurement menu. We need to be able to plot a value, such as the mean corruption risk index or more simply, the number of contracts, for a country o…
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I generate a lot of graphs of the same type. And they all have a different scale along the y-axis. And the step.increase default value is not suitable, because the lines on the graph with the p-value …