robinweide GENOVA issues

robinweide / GENOVA

GENome Organisation Visual Analytics

GNU General Public License v3.0

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issues

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Plotting issues (compartment_matrixplot, ATA plot)

#360 tinyimp80 opened 3 weeks ago
0
Get average interaction submatrices from pre established contact file

#359 Lucas446 opened 4 weeks ago
1
compartment strength score

#358 IcyYeyangchen opened 4 weeks ago
2
PE-SCAn shifted background standard deviation

#357 Lucas446 closed 4 weeks ago
2
Difference between input matrix value and GENOVA matrix object

#356 Lucas446 closed 4 weeks ago
2
Pileup Plot Score

#355 LucasMcNU opened 1 month ago
1
PESCAn Error: cannot allocate vector of size 150.9 Gb

#354 YuZhang337 opened 4 months ago
4
Can genova be applied to hichip data analysis?

#353 YuZhang337 closed 4 months ago
2
Example in Tutorial page 42 or PE-SCAn perspective plot could not be reproduced due to error "mfrow" has the wrong length

#352 usernicai opened 4 months ago
0
Errors with chromosome_matrix() and load_contacts() function~

#351 Miracle-Yao opened 4 months ago
2
calculating insulation score get inconsistant results

#350 jiangshan529 opened 5 months ago
5
Sync dev with master

#349 teunbrand closed 5 months ago
0
Fix some visualisation issues

#348 teunbrand closed 5 months ago
0
Matrix plot visualization issue

#347 LucasMcNU closed 5 months ago
3
HiCExplorer final mcool file load in GENOVA

#346 usernicai opened 5 months ago
1
APA differential analysis between two different sets of loops in one sample

#345 Moonriver1988 closed 5 months ago
2
ARA and pyramid plots issues

#344 BERICP01 opened 6 months ago
1
Memory footprint in Rstudio

#343 LucasMcNU opened 7 months ago
6
centromeres setting

#342 tan5251 opened 7 months ago
1
how to create CS_discovery objsect from extrenal compartment results?

#341 tan5251 opened 7 months ago
3
load .hic file

#340 AlcaArctica closed 5 months ago
4
Disruption after load files

#339 ccmeth opened 10 months ago
8
Question: Plot relative contact frequencies stratified by distance for a limited region?

#338 kalavattam opened 10 months ago
0
When I used loops obtained at a 50Kb resolution and a 50Kb matrices to create the APA plot, I obtained abnormal results.

#337 Chuan0518 opened 10 months ago
2
hic file load error

#336 Chuan0518 opened 10 months ago
2
Importing data from .hic and pyramid plot

#335 ionas23 opened 1 year ago
2
Juicer import calling centromeres well outside of chromosome size.

#334 tolender closed 11 months ago
1
Try to fix #332

#333 teunbrand closed 1 year ago
0
Issue reading in .hic (possibly due to juicer hic version 9)

#332 tolender closed 1 year ago
8
APA results only contains a minimum part of original loops

#331 Devalock opened 1 year ago
3
Fix #328

#330 teunbrand closed 1 year ago
0
list of loops in hic_matrixplot

#329 Guanchen-Li opened 1 year ago
3
unused argument (na.rm = TRUE) error occur when I use compartment_matrixplot function

#328 hanshanmengqi closed 1 year ago
4
About calling compartment PC1 values

#327 GleeenSIBS opened 1 year ago
1
Issues related to "chip" in function "hic_matrixplot"

#326 ccmeth opened 1 year ago
0
Why are RCP plots not starting at the same Y-axis?

#325 Elphege-Nora opened 1 year ago
0
Problem when reading in the second .hic file

#324 ReinhardUllmann opened 1 year ago
5
Concern related to function "intra_inter_TAD"

#323 ccmeth opened 1 year ago
3
C-scan error

#322 ianikim opened 1 year ago
2
PEScan CTCF plot from the paper

#321 odovgusha opened 1 year ago
3
problem to install GENOVA

#320 sophiechroma closed 1 year ago
0
compartment_score

#319 knight-hzj opened 1 year ago
4
how to write insulation score s3 format to bedgraph format

#318 jiangshan529 opened 1 year ago
4
Sync dev branch

#317 teunbrand closed 1 year ago
0
Loading part of Hi-C experiment

#316 teunbrand closed 1 year ago
0
Update main

#315 teunbrand closed 1 year ago
0
Error: Can't add `add_tads(tad)` to a ggplot object

#314 QianzhaoJ closed 5 months ago
4
C-SCAn bedfiles

#313 Moonriver1988 opened 1 year ago
3
Error in APA analysis

#312 jiangshan529 opened 1 year ago
10
How to add PCA1 value in Saddle plots

#311 liufuyan2016 opened 1 year ago
0