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robinweide
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GENOVA
GENome Organisation Visual Analytics
GNU General Public License v3.0
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ARA contrast plot results consultation
#365
YuZhang337
opened
1 day ago
0
How to convert virtual4c result to bigwig track
#364
luckysardar
opened
3 weeks ago
0
Add domainogram for Virtual 4C plot?
#363
Qidong-LI
closed
1 month ago
4
Error in insulation_score()
#362
gxygogogo
opened
1 month ago
5
Balancing for mcool files while loading contacts？
#361
MaybeBio
opened
2 months ago
5
Plotting issues (compartment_matrixplot, ATA plot)
#360
tinyimp80
opened
3 months ago
1
Get average interaction submatrices from pre established contact file
#359
Lucas446
opened
3 months ago
1
compartment strength score
#358
IcyYeyangchen
opened
3 months ago
2
PE-SCAn shifted background standard deviation
#357
Lucas446
closed
3 months ago
2
Difference between input matrix value and GENOVA matrix object
#356
Lucas446
closed
3 months ago
2
Pileup Plot Score
#355
LucasMcNU
opened
4 months ago
1
PESCAn Error: cannot allocate vector of size 150.9 Gb
#354
YuZhang337
closed
1 day ago
4
Can genova be applied to hichip data analysis?
#353
YuZhang337
closed
7 months ago
2
Example in Tutorial page 42 or PE-SCAn perspective plot could not be reproduced due to error "mfrow" has the wrong length
#352
usernicai
opened
7 months ago
0
Errors with chromosome_matrix() and load_contacts() function~
#351
Miracle-Yao
opened
7 months ago
2
calculating insulation score get inconsistant results
#350
jiangshan529
opened
8 months ago
6
Sync dev with master
#349
teunbrand
closed
8 months ago
0
Fix some visualisation issues
#348
teunbrand
closed
8 months ago
0
Matrix plot visualization issue
#347
LucasMcNU
closed
8 months ago
3
HiCExplorer final mcool file load in GENOVA
#346
usernicai
opened
8 months ago
1
APA differential analysis between two different sets of loops in one sample
#345
Moonriver1988
closed
8 months ago
2
ARA and pyramid plots issues
#344
BERICP01
opened
9 months ago
1
Memory footprint in Rstudio
#343
LucasMcNU
opened
10 months ago
6
centromeres setting
#342
tan5251
opened
10 months ago
1
how to create CS_discovery objsect from extrenal compartment results?
#341
tan5251
opened
10 months ago
3
load .hic file
#340
AlcaArctica
closed
8 months ago
4
Disruption after load files
#339
ccmeth
opened
1 year ago
8
Question: Plot relative contact frequencies stratified by distance for a limited region?
#338
kalavattam
opened
1 year ago
0
When I used loops obtained at a 50Kb resolution and a 50Kb matrices to create the APA plot, I obtained abnormal results.
#337
Chuan0518
opened
1 year ago
2
hic file load error
#336
Chuan0518
opened
1 year ago
2
Importing data from .hic and pyramid plot
#335
ionas23
opened
1 year ago
2
Juicer import calling centromeres well outside of chromosome size.
#334
tolender
closed
1 year ago
1
Try to fix #332
#333
teunbrand
closed
1 year ago
0
Issue reading in .hic (possibly due to juicer hic version 9)
#332
tolender
closed
1 year ago
8
APA results only contains a minimum part of original loops
#331
Devalock
opened
1 year ago
3
Fix #328
#330
teunbrand
closed
1 year ago
0
list of loops in hic_matrixplot
#329
Guanchen-Li
opened
1 year ago
3
unused argument (na.rm = TRUE) error occur when I use compartment_matrixplot function
#328
hanshanmengqi
closed
1 year ago
4
About calling compartment PC1 values
#327
DontCareYaYa
opened
1 year ago
1
Issues related to "chip" in function "hic_matrixplot"
#326
ccmeth
opened
1 year ago
0
Why are RCP plots not starting at the same Y-axis?
#325
Elphege-Nora
opened
1 year ago
0
Problem when reading in the second .hic file
#324
ReinhardUllmann
opened
1 year ago
6
Concern related to function "intra_inter_TAD"
#323
ccmeth
opened
1 year ago
3
C-scan error
#322
ianikim
opened
1 year ago
2
PEScan CTCF plot from the paper
#321
odovgusha
opened
1 year ago
3
problem to install GENOVA
#320
sophiechroma
closed
1 year ago
0
compartment_score
#319
knight-hzj
opened
1 year ago
4
how to write insulation score s3 format to bedgraph format
#318
jiangshan529
opened
1 year ago
4
Sync dev branch
#317
teunbrand
closed
1 year ago
0
Loading part of Hi-C experiment
#316
teunbrand
closed
1 year ago
0
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