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robinweide
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GENOVA
GENome Organisation Visual Analytics
GNU General Public License v3.0
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C-SCAn bedfiles
#313
Moonriver1988
opened
2 years ago
3
Error in APA analysis
#312
jiangshan529
opened
2 years ago
10
How to add PCA1 value in Saddle plots
#311
liufuyan2016
opened
2 years ago
0
HiCPro sample format to be read by GENOVA?
#310
pollicipes
closed
2 years ago
7
Several chromosomes has error after loading the HiC file
#309
Moonriver1988
opened
2 years ago
2
TAD insulation score
#308
BenxiaHu
opened
2 years ago
1
Insulation score visualization problem
#307
Moonriver1988
closed
1 year ago
4
compartment analysis
#306
BenxiaHu
opened
2 years ago
15
how to show/print the APA value
#305
BenxiaHu
opened
2 years ago
5
how to get the raw counts for the input loops set
#304
zengyingying2015
opened
2 years ago
1
the difference of compartment/TAD
#303
BenxiaHu
opened
2 years ago
0
load_contacts with one only chromosome
#302
zygmap
closed
2 years ago
1
TAD analysis and plot
#301
BenxiaHu
opened
2 years ago
0
how to interpret saddle plot
#300
BenxiaHu
opened
2 years ago
8
Are Saddle plots showing obs/exp between all bins or just the ones in cis on the same chromosome ?
#299
Elphege-Nora
opened
2 years ago
2
Changing colors
#298
sebastian-gregoricchio
closed
2 years ago
2
CSCAn -> visualise error
#297
odovgusha
closed
1 year ago
4
overlay virtual 4C figure
#296
Moonriver1988
opened
2 years ago
6
PESCAn and sequencing depth
#295
odovgusha
opened
2 years ago
1
insulation_domainogram / subscript out of bounds
#294
amodrek
opened
2 years ago
1
'addnames' parameter of the 'hic_matrixplot' function dose not work
#293
TintingLi
opened
2 years ago
0
`data.table` `Error in vecseq...` bug when running RCP
#292
xscapintime
closed
1 year ago
2
Extract values used for saddle plot visualization
#291
hiroyukikato911
opened
2 years ago
6
Fix #289
#290
teunbrand
closed
2 years ago
0
Insulation score visualisation
#289
meisterpeter
closed
1 year ago
2
Can I calculate RCP normalized with genome-wide, but with only autosome
#288
chenggang108
opened
2 years ago
0
dims do not match the length of object when running ARA
#287
chenggang108
opened
2 years ago
2
How to get TAD boundaries from `call_TAD_insulation`
#286
YiweiNiu
closed
2 years ago
2
Example in Tutorial page 32 could not be reproduced
#285
YiweiNiu
opened
2 years ago
2
Issue loading external compartment scores
#284
batzza
closed
2 years ago
8
Problem in loading data
#283
canfeng-HUA
closed
2 years ago
2
Version bump, dev to master
#282
teunbrand
closed
2 years ago
0
Merge master into dev
#281
teunbrand
closed
2 years ago
0
hic_matrixplot plot all chromosome?
#280
liufuyan2016
opened
3 years ago
1
compartment_score error
#279
liufuyan2016
closed
3 years ago
1
compartment_score error
#278
liufuyan2016
closed
3 years ago
5
compartment_score erro
#277
liufuyan2016
closed
3 years ago
1
error in load_contacts() for HiCPro output files
#276
TerezaClarence
closed
2 years ago
7
Where was the centromere file downloaded?
#275
yuanyuanhe2021
closed
2 years ago
1
Predicting A/B from GC content?
#274
TerezaClarence
opened
3 years ago
4
Use comparment scores from other software to use `saddle` and `compartment_matrixplot`?
#273
YiweiNiu
closed
2 years ago
4
How to generate a figure like the Supplementary figure 4C in your paper?
#272
YiweiNiu
closed
3 years ago
4
Requesting for test data
#271
jinsooahn
opened
3 years ago
3
A bit of maintenance
#270
teunbrand
closed
3 years ago
2
Contrary results of RCP analysis and compartment strength
#269
YiweiNiu
closed
3 years ago
2
strand aware ARA
#268
fgualdr
closed
3 years ago
2
How to plot the all-chromosome matrix?
#267
Elphege-Nora
closed
2 years ago
2
List of bed entries for tornado_insulation()
#266
teunbrand
closed
3 years ago
1
support of mcool format?
#265
Elphege-Nora
closed
3 years ago
7
How the difference is computed when 3 experiments are used in saddle function?
#264
YiweiNiu
closed
3 years ago
2
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