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Hi-
I've been using the fragpipe N-Glyco-HCD/LFQ and O-Glyco-HCD workflows for glycopeptide analysis. Some of my protocols involve chemical modifications to terminal glycans. I am wondering if ther…
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Sequences: EPI_ISL_19036878, PP713005.1 (Likely from the same patient, though metadata indicates that it is sequenced from baseline surveillance).
BQ.1.1 recently (March 21st 2024) sampled with inter…
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It seems we already have functionality to predict internal fragments, but is it implemented in topdownr? If not please implement it and I will start testing on our datasets.
About PTMs. We need to …
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@nunogit will look at how to provide guidelines wrt ID providers and SOPs for next datasets and which form that should be in: part of the CMMI, included in cookbook...?
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Hello MSFrager Team,
I have been trying to analyze my glycoproteomic data (orbitrap) with MSFrager as the identifications and their confidence looks better than other search engines. But I am not a…
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Search motif for GlyTouCan ID G00054MO which is Sia Lewis X:
![motif](https://github.com/glygener/glygen-issues/assets/2267640/b77bf4be-9eb9-4cde-9758-ef9a300655f9)
Number of sites: 102 (suspici…
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Dear all,
It is my pleasure to introduce to you this test (beta) version of our GlycoShape database and toolbox for glycomics and glycoanalytics. GlycoShape is our open access (OA) online repo…
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[log_2024-01-17_15-17-10.txt](https://github.com/Nesvilab/FragPipe/files/13978477/log_2024-01-17_15-17-10.txt)
- Describe the issue or question: I was not having any issues using a large database…
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Hi Peter
Looks like these Reactome pathway xrefs are missing:
gluconeogenesis (GO:0006094) = R-HSA-70263
fructose biosynthetic process (GO:0046370) = R-HSA-5652227
galactose catabolic process vi…
sjm41 updated
2 weeks ago
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[PGFinder 2.0.pptx](https://github.com/Mesnage-Org/pgfinder/files/14169975/PGFinder.2.0.pptx)