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Using unitig-caller 1.3.0 to count unitigs in a set of draft genome assemblies for GWAS, I'm unable to produce any output and get the error "Error "CompactedDBG::construct(): Could not create tmp dire…
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How may I solve this?
$ python gwas_summary_imputation.py -by_region_file $DATA/eur_ld.bed.gz -gwas_file harmonized.test.txt.gz -parquet_genotype $DATA/reference_panel_1000G/chr1.variants.parquet…
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We are planning to add a GWAS study widget to the current platform disease page.
By querying the [gwas_study index API by EFO](https://github.com/opentargets/issues/issues/3428) (only for `studyType g…
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The function to generate the Manhattan plot requires the annotation column from the unitigs dataset (data/gwas/tet/tet_unitig_annotated_WHO_N.txt) (column position 9). However, the dataset only has 8 …
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Hi there, thanks for this great tool!
About the demonstration of gwaslab, I have one little question about gwas analysis.
Certain gwas results may represent sproadic signals across whole genome, l…
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As a **community user** I want **to be able to understand how the Gentropy ariflow pipeline works ** because **I want to reproduce it with nextlfow.**
## Background
Background to this task is a…
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Hi Tian,
I am working on a few phenotypes from UK Biobank GWAS sumstats as my discovery data. Since I've chosen the meta-analyzed ones from multi-ancestries, I should use an LD reference panel that…
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I wonder if blink can be used for kmer based GWAS using kmer presence absence matrix without positions of the kmer on a reference genome.
Thank you
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Hi,
Thanks for the great work running thousands of GWAS on All of Us data.
Can you please provide a list with the covariates used in the analyses?
Cheers,
Pierre
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I have recently been running a MegaPRS on some meta-analysis summary statistics and using 1000G as a reference panel. This is something I have run earlier this year (prior to version 6) and it worked …