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I am following the [HiChIP docs](https://hichip.readthedocs.io/en/latest/index.html). I am wanting to run all these processes with just having Docker and Singularity installed on the lab computer. Whe…
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Hello,
I got an error when I tried to quickly view a .mcool file using `higlass-manage view file_name.mcool`
**OSError: [Errno 18] Invalid cross-device link: '../HiChIP/KCl_H3K27ac/Processed_KCl_0…
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Hi,
I plan using your tool to analyze HiChIP data (followed by the FithHiChIP tool).
At what step and how is it possible to merge replicates (which have been checked for reproducibility by HiCRep)?…
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Hi,
I've being using hichipper in my hichip data set but although the log file indicates the generation of the mango file, I cannot find it in the output folder.
Any ideas?
p.s. for the same datas…
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En el análisis de datos de HiC, HiChip y varios *C, existen varios pipelines para alinear los datos contra un genoma de referencia que normalmente generan archivos bam, además de otros formatos especí…
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**Use case**
I am trying to run `macs2 callpeak` 2.2.7.1 using a ChIP-seq alignment produced by `bwa mem` 0.7.17. The alignment has been sorted with `samtools sort`. As far as the alignment goes, `…
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I was trying out the installation guide.
Installation seems fine.
When I was trying this command,
`"/home/wlwtan/.local/bin/hichipper` --out output1 `yaml/one.yaml",`
it failed with these followin…
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Hello,
I have a question regarding categorization of loops.
So I have used FithiChIP for callong loops for two samples of CTCF-HiChIPs (L, peak to all, FDR 0.01) and I used the DiffAnalysisHiChIP.r…
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Hello,
I run Hichipper to infer peaks from my data, however, it always gives me this error below, could you help me to figure it out? Thank you!
Sun Sep 06 12:52:34 CDT 2020: Starting hichipper p…
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Hello, I have a .hic (h3k27ac HiChIP) data and a .bed.gz (H3k27ac peaks) downloaded from GEO and run FitHiChIP below:
./FitHiChIP_HiCPro.sh -C configfile_BiasCorrection_CoverageBias
Then I got e…