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aryeelab
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hichipper
A preprocessing and QC pipeline for HiChIP data
MIT License
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Conceptual question: identifying anchors
#95
evaham1
opened
1 year ago
0
userSuppliedPeaks.bed.tmp_pad.bed.tmprf.tmp
#94
yalongan
opened
1 year ago
0
Rscript path
#93
yanchunzhang
opened
2 years ago
0
"error in evaluating the argument 'object' in selecting a method for function 'summary': missing value where TRUE/FALSE needed"
#92
Moonriver1988
opened
2 years ago
3
Something went wrong in determining peaks for anchor inference; rerun with the flag to debug.
#91
Gemma-Zhang-326
opened
3 years ago
4
problem with python script
#90
robeach78
opened
3 years ago
3
Error determining peaks for anchor inference
#89
AnaAzambuja
opened
3 years ago
2
Something went wrong in determining peaks for anchor inference
#88
woshiyangsi
opened
3 years ago
0
Question about summary table in QC report HTML page
#87
ledsall
opened
3 years ago
0
error in running qcReport_make.Rmd
#86
jielv
opened
3 years ago
1
"*_temporary_hichipperPeaks.bed_pad.bed.tmp" has size 0 issue
#85
shanwai1234
opened
4 years ago
1
Error determining peaks for anchor inference
#84
AnaAzambuja
opened
4 years ago
3
HiChIP vs HiC input?
#83
Mlad22
opened
4 years ago
2
IOError: [Errno 2] No such file or directory: .log
#82
Rseq
opened
4 years ago
4
.cool format output
#81
vidaletal
opened
4 years ago
0
--macs2-string parameter: can I use --control?
#80
vidaletal
opened
4 years ago
2
outputing statistics different with the qcreport
#79
Wenbin-Wang
opened
4 years ago
2
hichipper in CALL mode
#78
md1587
opened
4 years ago
1
outputing statistics about anchor peaks
#77
armenabnousi
opened
4 years ago
1
hichipper into .hic file
#76
AnaAzambuja
opened
5 years ago
1
Issue with MACS Output
#75
jlpulice
opened
5 years ago
10
Testing a version for background sample processing
#74
caleblareau
closed
5 years ago
0
ERROR: Missing hic_results or bowtie_results files for H446-rep
#73
jlpulice
closed
5 years ago
2
no mango file
#72
AnaAzambuja
opened
5 years ago
7
Parameters questions
#71
skytguuu
closed
5 years ago
4
install issue
#70
skytguuu
closed
5 years ago
0
No qc reports
#69
emarti88
opened
5 years ago
1
Double counting validParis
#68
WeiqiangZhou
opened
5 years ago
2
chip-seq input question of Hichipper
#67
skytguuu
closed
5 years ago
1
Hichipper Inter-chromosomal Loop Statistics
#66
bdecker01
opened
5 years ago
2
HQ Unique Mapped more than Total PETs???
#65
JungWoongJae
opened
5 years ago
0
Understanding the output
#64
gouthamatla
opened
5 years ago
0
Hicpro files
#63
0xaf1f
closed
5 years ago
6
Read counts in anchors
#62
gouthamatla
opened
5 years ago
0
Integration of replicates for HiChIP data
#61
yhx-tj
opened
5 years ago
0
Error in { : task 1 failed - "need at least four unique 'x' values"
#60
ghost
opened
5 years ago
0
Error using GRCh38.p12 human genome assembly
#59
bressin
closed
5 years ago
6
Error in hichipper Rscript qc Report
#58
boconnell89
opened
5 years ago
2
Hichipper on DNase/Mnase type of data (no Resfrag required)
#57
gundalav
opened
5 years ago
1
About the pre processing / RM_DUP = 0
#56
vidaletal
closed
4 years ago
4
.rds not generated
#55
aperreault
opened
5 years ago
2
Error in { : task 1 failed - "need at least four unique 'x' values" ; Calls: %do% -> <Anonymous>
#54
vidaletal
closed
5 years ago
2
the difference between *.interaction.txt.gz and *.filt.intra.loop_counts.bedpe
#53
WenChangYu
opened
5 years ago
1
could not find function "endsWith"
#52
wlwtan
opened
6 years ago
2
*_allValidPairs: No such file or directory
#51
DoaneAS
closed
5 years ago
4
--make-ucsc flag error
#50
vidaletal
closed
4 years ago
3
Error in { : task 1 failed - "incorrect number of dimensions" Calls: %do% -> <Anonymous> Execution halted
#49
vidaletal
closed
5 years ago
1
inputting bam file - 'one.filt.intra.loop_counts.bedpe' does not exist in current working directory
#48
armenabnousi
opened
6 years ago
1
ERROR: macs2 peak calling was not successful
#47
aperreault
opened
6 years ago
12
Error message regarding 'x' values
#46
uklejaj
opened
6 years ago
3
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