-
Hi,
I would like to report on a typo in the plot_block function for the option "orientation"
> plot_block(parent.t.sliced_blocklist, orientation="front")
Error in plot_block(parent.t.sliced_bl…
-
Simplify is a swiss-army knife operation - we should give a tutorial that explains how it works at a high-level and goes through some of the things you can do with it.
-
**Short description of the problem:**
Simulation with OutOfAfrica_3G09 model generates two haplotypes with a very high amount of shared derived sites causing the diploid individuals constructed b…
-
One of the most important comments I got in my thesis examination was regarding our definition of IBD. Our current implementation of `ibd_segments` treats segments as distinct if they have been inheri…
-
Hi, I used the following command to detect IBD segments of two samples, but no IBD segments were detected, I have no idea how to adjust the parameters or vcf file content, could you please give me som…
-
Curious to know if/when you might support raw genotypes in RaPID?
Thanks!
-
Greetings Harald, Yilei and ancIBD devs,
I'm Sanjay C Nagi, a postdoc working on the Anopheles 1000 genomes project and its successors. I am using ancIBD on whole, genome sequence data from mosqui…
-
Monero mining has been [centralized to 2-3 large pools](https://miningpoolstats.stream/monero) for a long time (recently, the largest pool even briefly exceeded 50% of the hashrate). This unhealthy si…
-
This design is due to the pipeline dependence on `hap-ibd.jar` and `ibd-ends.jar` and 2-ploidy VCF file with `|`. The estimation procedure can handle any ploidy.
-
When analyzing genomes with varying recombination rates, the length threshold for identifying identical by descent (IBD) segments cannot be constant when measured in base pairs (bp). To obtain accurat…