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`chr5 22078163 Minda_111 N . PASS SVLEN=54;SVTYPE=DEL;SUPP_VEC=PB_ID_10795_2,PB_d_363,ONT_ID_28643_2,ONT_d_157,ILL_MantaDEL:95669:0:0:0:0:0,PB_severus_DEL5649,ONT_severus_DEL6516,ILL_2186766853:2,ILL…
jzook updated
1 month ago
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Hi,
I'm having trouble accessing BAMs on s3, with both the Mac desktop and web apps. On the desktop app, the Google and Amazon menu aren't visible (I tested multiple versions, including 2.18.4). Th…
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Recently upgraded IGV from 2.17.4 to 2.18.4. With this update, we noticed that IGV session made with whole transcriptome bam files, would not load correctly.
They would load initially, but any sub…
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### Description of feature
The current rna-seq pipeline, generates two bigwig files one each for each strand. it would be great if like chipseq pipeline, it generate only one bigwig files, would be h…
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Not exactly Seqr related, but similar functionality exists for the web IGV integration.
We want some way to view reads from protected buckets (that users don't have direct read access) in Desktop IGV…
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Dear IGV Support Team,
I hope this message finds you well. The IGV program used to work perfectly on our desktop devices but suddenly it stopped lunching. we deleted the program and tried both the Wi…
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Hi Alex,
I am trying to analyze our customized 10x snRNA-seq data to see alternative splicing, but I found junction read counts stored in `matrix.mtx` do not match my observation of bam files in I…
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Hello,
I am using IGV to visualize my genomic data and have encountered an issue where the numerica…
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Dear IGV Support Team,
I hope this message finds you well. I would like to ask is it possible to overlay two .bed files or two .narrowPeak files in IGV? I've tried and was only able to overlay two…
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Hi Felix,
I used Sherman dev with the following command line:
```
${Sherman}/Sherman --length 100 --number_of_seqs 10000000 --genome_folder ${ws}/SimulateData/ref --paired_end --conversion_rate ${c…