-
**Snakemake version**
7.21.0
**Describe the bug**
Snakemake rule to create a kaiju database (https://github.com/bioinformatics-centre/kaiju) ends with error. The same command run successfully…
-
Hi,
I'm trying to make use of your lib but I can't make it work, it says:
$ go run main.go
# github.com/spf13/kaiju/commands
/opt/gocode/src/github.com/spf13/kaiju/commands/sio.go:32: undefined: so…
-
## Question
Hi!
I need to use Nestia on a Nest project with monorepo structure. Sadly, I get this error after enable monorepo mode.
```
Error: Error on nestia.core.TypedRoute.Get(): no transform…
-
When executing the demo first I had the following error:
Uncaught ReferenceError: $ is not defined
I fixed this by adding jquery:
Then now I'm having Uncaught ReferenceError: Kaiju is not define…
-
Hi,
Does someone know if it is possible to read a Snakefile in Python and load all the rules into variables?
For example, given the following Snakefile
```
WDIR="test"
rule all:
input:…
-
I was running the pipeline and found kaijuReport was actually removed from the latest kaiju version. But I couldnot find the replace command to do the kaijuReport.
-
`Gargantuan (30-foot-by-30-foot space) for a kaiju`
![image](https://user-images.githubusercontent.com/81383360/221431842-c7bc49dc-6e3c-44fa-aac0-a09796b345f2.png)
-
Hello,thank you for this useful tool, I use this command line:
./kaiju -z 64 -t nodes.dmp -f kaiju_db_nr.fmi -i /data1/qinjunjun/zhu_bingduzu/clean_data/1_final_R1.fastq.gz -j /data1/qinjunjun/zhu…
-
Hi, I've been trying to set up the mar database for a metagenomics project, but I've been running into two odd issues:
1. Sometimes, when installing the database (I've found that this goes with all…
-
Hi @nickallsing @nallsing-salk
Very interesting research you guys did. I was trying to replicate your methodology but then I figured there were no qiime analysis scripts. I managed to import the mod…