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Dear all
This is not an issue, its more of a question about the results i get when I run the eggnog emapper.
At the output table, when i look at the KEGGs, sometimes there are more than one KEGG I…
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This is for annotation with KOs of a metagenomic project, sampled from many locations. I am looking to use the workflow:
assembled contigs -> Prokka -> proteins WITH reference to original contigs -> …
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Validation のための当面の課題:
https://operondb.jp/known
のGFFファイル及び正解のリストを作る
ODBからKnown moduleのすべての項目を生物種ごとにまとめ、それぞれの正解遺伝子IDとしてまとめる。
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error:
```php
Step 1: Preloading File sites/all/modules/custom/tripal_analysis_kegg/kegg.obo...
array_key_exists(): The first argument should be either a string or an integer OBOImporter.inc:22…
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Hello.
I have metagenome fsatq files.
How can I analyze files by converting them?
thanks.
Kohei
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Is there a way to set a memory cap for metabolic? Is it sufficient just to reduce the number of cores used? (I was running w/ 40 cores and it ate up 1TB of RAM, which was unexpected and a little unkin…
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Holes remain in the queuine/queuosine pathways in eukaryotic organisms. While QTRT1 and QTRT2 are relatively well understood in their roles across many model eukaryotes, other biochemistries are recog…
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Hi,
I have been trying to incorporate Eggnog Mapper into a genome annotation pipeline ; and find that when using the "Metazoan" reference database on an annotation of a fish genome, I sometimes get…
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Hello,
I have used tax4fun to predicts the functional capabilities of my microbial
communities on 16S data samples.
It gives a output file as . txt and below how it looks like:
![image](htt…
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Dear all,
I am trying to modify the cluster_params parameter, but I can't seem to find the map_read_to_genes.py script -- in fact, the entire config folder is missing from the conda installation. I…
padbc updated
2 years ago