AnantharamanLab METABOLIC issues

AnantharamanLab / METABOLIC

A scalable high-throughput metabolic and biogeochemical functional trait profiler

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issues

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Disable hard-coded cpu count for test

#194 rfox-mbl opened 1 month ago
0
readline() on closed filehandle _IN at METABOLIC-C.pl line 1909. Cannot fork: Cannot allocate memory at /home/hyShen/miniconda3/envs/METABOLIC

#193 hyShen-hzau opened 1 month ago
6
readline() on closed filehandle _IN at METABOLIC-C.pl line 1909.

#192 hyShen-hzau opened 1 month ago
0
mv: cannot stat '/home/adm/dingyi/metabolicC/Output_energy_flow/Energy_plot/network.plot.pdf': No such file or directory

#191 yi-dingg opened 2 months ago
1
When running metabolic-c, I get the following error:

#190 HAIS-st opened 2 months ago
3
Can't find any loadable formatter class in Pod::Perldoc::Toterm

#189 timeresistance1996 opened 2 months ago
0
metatranscriptomic errors

#188 LiZhihua1982 opened 3 months ago
0
metatranscriptomic analysis error

#187 LiZhihua1982 opened 3 months ago
0
Mistake in the description of hzoA gene in the final table

#186 Tarasovk49 opened 4 months ago
0
Cannot allocate memory

#185 Fervitttt opened 5 months ago
0
Sulfite oxidation/Sulfate Reduction

#184 Drob84761 opened 5 months ago
0
Issues installing required R packages

#183 brauliovill opened 5 months ago
1
WHY only 1 CPU when hmmsearch

#182 PonderLi opened 6 months ago
1
Hi @patriciatran, Mrtabolic-c was unsuccessful in producing All_gene_collections_mapped.depth.txt documents

#181 HAIS-st closed 2 months ago
0
Perl version conflict when installing via YAML

#180 gcremers opened 7 months ago
0
cannot locate statistic/descriptive.pm in for metabolic-c.pl line 40

#179 laibinhuang opened 7 months ago
0
Can metabolic used for annotation of virus genome?

#178 xjhzjucas closed 8 months ago
2
The result files "All_gene_collections_mapped.depth.txt" ,"Functional_network_figures" are empty.

#177 mojingmj123 opened 8 months ago
2
Access to test filés in google drive

#176 diogoburgos closed 8 months ago
2
Bio::Perl instalation

#175 diogoburgos opened 8 months ago
1
Running 7000+MAGs, no progress after Prodigal

#174 Burgersnow opened 8 months ago
3
The gtdbtk module throws an error: 'EXCEPTION: OSError MESSAGE: [Errno 12] Cannot allocate memory‘ when running METABOLIC-C.pl.

#173 ZhengXiaoxuan11542 opened 9 months ago
2
How to get access to test google drive files?

#172 Henryranger888 closed 8 months ago
2
What are values in Sequential_Transformation_input_2 based on?

#171 LunavdL opened 10 months ago
0
Should the arrow of Step8: Nitrite ammonification start from nitrate or nitrite?

#170 huizhen-yan closed 11 months ago
1
Possibly wrong link for MEROPS in run_to-setup.sh

#169 CristinaMoraru closed 8 months ago
1
(Question) Can you give it proteins instead of genomes?

#168 jolespin opened 11 months ago
0
Not a bug/ only a question

#167 Sharifah89 opened 12 months ago
0
Output_energy_flow/Energy_plot/network.plot.pdf': No such file or directory

#166 ntromas closed 8 months ago
1
error with All_gene_collections.gene

#165 myonaung opened 12 months ago
0
Installation on Server Issues

#164 Calvin2077 opened 1 year ago
4
.yml file bug and about the test files download

#163 xjhzjucas opened 1 year ago
0
Plot sankey diagram at different classification levels?

#162 chengzhongyi8 opened 1 year ago
1
I get two different results using when I run the METABOLIC-G on the same genome.

#161 Sharifah89 opened 1 year ago
2
CoverM parameters and Taxonomy Figures

#160 cmmertz opened 1 year ago
1
XS.c: loadable library and perl binaries are mismatched (got handshake key 0xde00080, needed 0xdb00080)

#159 Sharifah89 opened 1 year ago
0
The empty value in the MW-score_result.txt

#158 haihao999 opened 1 year ago
0
Cannot create directory ... Permission denied

#157 Valentin-Bio closed 1 year ago
0
Error with conda installation

#156 priscillaisaac98 opened 1 year ago
3
This script is for a 2nd run using the previous genome annotation results. Please provide the output folder of the previous run

#155 Sharifah89 opened 1 year ago
0
Coverage value(average)

#154 Drob84761 opened 1 year ago
5
Empty output files after running METABOLIC-C

#153 Valentin-Bio opened 1 year ago
1
Perl issue with test run and installation

#152 Breakcontinue2 opened 1 year ago
1
METABOLIC-C issue?

#151 labrat789 closed 1 year ago
5
GTDB version

#150 CynthiaChibani closed 1 year ago
8
All cells of sheets of METABOLIC result table show absent/none

#149 talam-biotech closed 1 year ago
3
Transcripts

#148 Drob84761 opened 1 year ago
0
MW-score_result_table_input.txt function 1 and function 2 clarification

#147 Drob84761 closed 1 year ago
0
Calculation of gene coverage

#146 akbyers opened 1 year ago
4
Is it possible to do the METABOLIC_C with the contigs not the genomes?

#145 Sharifah89 opened 1 year ago
3