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AnantharamanLab
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METABOLIC
A scalable high-throughput metabolic and biogeochemical functional trait profiler
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readline() on closed filehandle _IN at METABOLIC-C.pl line 1909.
#207
Christaline-George
opened
1 day ago
0
Execution halted problem
#206
fafuwjw
opened
1 month ago
1
Application to RNA-seq data
#205
Christaline-George
closed
2 weeks ago
1
Mapping Transcript to MAG
#204
cmmertz
closed
2 weeks ago
1
Bug is accessory script gff2fasta_mdf.pl
#203
loloyohe
opened
1 month ago
0
Metabolic-c test files stuck at Prodigal
#202
lacy111693
opened
1 month ago
5
Question about genomes dereplicated by dRep and multigroups MAGs METABOLIC-C analysis
#201
LvbBo
closed
2 months ago
0
Question about genomes dereplicated by dRep and multigroups MAGs METABOLIC-C analysis
#200
LvbBo
opened
2 months ago
0
SCRIPT TO PLOT MW-score_table
#199
Subhajeet1997
closed
2 weeks ago
2
-test true: Data test results
#198
Ryan-OCEA
opened
4 months ago
2
When running metabolic-c, I get the following error:
#197
hyShen-hzau
opened
4 months ago
1
Hello,install problem
#196
Jxuanrui
opened
4 months ago
0
Disable hard-coded cpu count for test
#194
rfox-mbl
closed
2 weeks ago
1
readline() on closed filehandle _IN at METABOLIC-C.pl line 1909. Cannot fork: Cannot allocate memory at /home/hyShen/miniconda3/envs/METABOLIC
#193
hyShen-hzau
opened
6 months ago
6
readline() on closed filehandle _IN at METABOLIC-C.pl line 1909.
#192
hyShen-hzau
opened
6 months ago
0
mv: cannot stat '/home/adm/dingyi/metabolicC/Output_energy_flow/Energy_plot/network.plot.pdf': No such file or directory
#191
yi-dingg
opened
6 months ago
1
When running metabolic-c, I get the following error:
#190
HAIS-st
opened
6 months ago
3
Can't find any loadable formatter class in Pod::Perldoc::Toterm
#189
timeresistance1996
opened
7 months ago
0
metatranscriptomic errors
#188
LiZhihua1982
opened
7 months ago
0
metatranscriptomic analysis error
#187
LiZhihua1982
opened
7 months ago
0
Mistake in the description of hzoA gene in the final table
#186
Tarasovk49
opened
8 months ago
0
Cannot allocate memory
#185
Fervitttt
opened
9 months ago
0
Sulfite oxidation/Sulfate Reduction
#184
Drob84761
opened
9 months ago
0
Issues installing required R packages
#183
brauliovill
opened
10 months ago
1
WHY only 1 CPU when hmmsearch
#182
PonderLi
opened
10 months ago
1
Hi @patriciatran, Mrtabolic-c was unsuccessful in producing All_gene_collections_mapped.depth.txt documents
#181
HAIS-st
closed
6 months ago
0
Perl version conflict when installing via YAML
#180
gcremers
opened
12 months ago
0
cannot locate statistic/descriptive.pm in for metabolic-c.pl line 40
#179
laibinhuang
opened
12 months ago
1
Can metabolic used for annotation of virus genome?
#178
xjhzjucas
closed
1 year ago
2
The result files "All_gene_collections_mapped.depth.txt" ,"Functional_network_figures" are empty.
#177
mojingmj123
opened
1 year ago
2
Access to test filés in google drive
#176
diogoburgos
closed
1 year ago
2
Bio::Perl instalation
#175
diogoburgos
opened
1 year ago
1
Running 7000+MAGs, no progress after Prodigal
#174
Burgersnow
opened
1 year ago
6
The gtdbtk module throws an error: 'EXCEPTION: OSError MESSAGE: [Errno 12] Cannot allocate memory‘ when running METABOLIC-C.pl.
#173
ZhengXiaoxuan11542
opened
1 year ago
2
How to get access to test google drive files?
#172
Henryranger888
closed
1 year ago
2
What are values in Sequential_Transformation_input_2 based on?
#171
LunavdL
opened
1 year ago
0
Should the arrow of Step8: Nitrite ammonification start from nitrate or nitrite?
#170
huizhen-yan
closed
1 year ago
1
Possibly wrong link for MEROPS in run_to-setup.sh
#169
CristinaMoraru
closed
1 year ago
1
(Question) Can you give it proteins instead of genomes?
#168
jolespin
opened
1 year ago
0
Not a bug/ only a question
#167
Sharifah89
opened
1 year ago
0
Output_energy_flow/Energy_plot/network.plot.pdf': No such file or directory
#166
ntromas
closed
1 year ago
1
error with All_gene_collections.gene
#165
myonaung
opened
1 year ago
1
Installation on Server Issues
#164
Calvin2077
opened
1 year ago
4
.yml file bug and about the test files download
#163
xjhzjucas
opened
1 year ago
0
Plot sankey diagram at different classification levels?
#162
chengzhongyi8
opened
1 year ago
1
I get two different results using when I run the METABOLIC-G on the same genome.
#161
Sharifah89
opened
1 year ago
2
CoverM parameters and Taxonomy Figures
#160
cmmertz
opened
1 year ago
1
XS.c: loadable library and perl binaries are mismatched (got handshake key 0xde00080, needed 0xdb00080)
#159
Sharifah89
opened
1 year ago
0
The empty value in the MW-score_result.txt
#158
haihao999
opened
1 year ago
0
Cannot create directory ... Permission denied
#157
Valentin-Bio
closed
1 year ago
0
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