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Hi,
Does MSFragger support ETD fragmentation? And if so, where can I select the ion type in the search?
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Not sure if this is the best repository to submit this issue, but I am planning to contribute MSMS data collected on an Agilent 6545 QTOF, which has not been added to the instrument list on the MassIV…
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Hi,
I have generated a DDA spectral library following the DIA-SpecLib_Quant workflow. I am trying to quantify the DIA files in a separate run by providing the library.tsv file , however it shows an …
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Dear Developers,
I am trying to develop the HMDB database based on the version 5 release, to annotate m/z generated by XCMS analysis on samples(LC-MS). I am following the protocol described on the …
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Add a `StandardsDb` object/database layout that extends the `CompDb` by adding an `ion` table which contains retention times and adducts of lab-standards (for a certain setup or matrix).
an `adduct…
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Especially in the introduction there are often core blocks with both python code and in the next line the output.
This should be avoided for binder.
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Hi all,
I am preparing some LC-MS data for submission. Unfortunately this directory schema is in TODO status. We have the data organized but there is no way to validate it as it expects a TODO rath…
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```
A Polar Negative_relative_matched_single_energy" to compoundDB in 65 msec. size= 17469
Database::loadCompoundSQL() Finished reading in data for "MSMLS_NEG_20_50_100"
Database::loadCompoundSQL()…
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**Is your feature request related to a problem? Please describe.**
Data acquired using a TIMS method, but not a PASEF method enabled cannot be loaded. The GUI gives the error :"Scan mode is not ddaP…
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Planning to contribute MSMS data collected on an Agilent 6545 QTOF, which has not been added to the instrument list on the Google Sheets ReDU template.
Accepted nomenclature found at https://www.ebi.…