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Hello,
When using variable selection method on markers, how do you calculate variance explained both genetic and phenotypic of all snps? I tried to follow the example in vignette but I am getting a…
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Linkage Disequilibrium code has other stakeholders! I have a meeting planned The Tuesday after Labor Day with a Graduate Student in the Talkowski Lab to discuss some headway that he's made on LD code …
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Collect ideas for methods to implement
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Is there a way in `Gviz` to include anything like a plot of which SNPs are in pairwise LD with each other? Something like this, for example:
![gwas](https://user-images.githubusercontent.com/18580…
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Hi, I am interetsed in your work. Excuse me, what does the fifth column of GWAS summary statistics files in vigente represent?
It shows below.
## V1 V2 V3 V4 V5
## 1 chr1…
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```
we need a relationship that aids in describing the susceptibility of a disease
due to variation(s) of genomic regions.
for example:
http://omim.org/entry/607339
this entry describes variants in…
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The time series features the package generates are not all uncorrelated with each other. For example, average and site self-similarity can correlate if measurements from one site are systematically la…
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Hi guys - hope all is well with you all!
Our team is keen to provide users of skeleSim the option to estimate Ne of simulated populations. So, we'd like to call on one of more of your package functio…
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# Association
- [ ] [A simple, consistent estimator of heritability for genome-wide association studies]( https://www.biorxiv.org/content/biorxiv/early/2017/10/17/204446.full.pdf)
- [x] [Multivari…
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# Training Tissue-Specific Gene Embeddings on GTEx Data - Nan Xiao | 肖楠
In this post, I showed how to train tissue-specific gene embeddings using GTEx data and text2vec. Two applications are presente…