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Combined mass spectrum tool works only for nominal masses... it would be awesome to implement it in order to retain all the decimal digits of the original data (independently from how many they are).
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Current Freeware tools provided by Bruker Daltonics such as CompassXport are command line based and designed for the Microsoft Windows operating system only. I also haven't managed to get them up and …
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Now that we've sorted the file conversion parameters to get MALDIquant to work in R, can adapt the workflow with MassUp being optional (still good for QC)
- [ ] update R codes for step 04_data-prep…
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- 4 404s on af
- 3 404s on atacseq
- 19 404s on codex
- 3 404s on imc
- lightsheet is still good!
- 1 404 on lcms
- 2 404s on maldi-ims
- 5 404s on mxif
- 6 404s on rnaseq
- 6 404s on seqfish…
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## Template Fixes:
## Specification Changes:
| Field | Change |
| --- | --- |
| `animal_source_of_food` | New picklist IDs |
| `food_product` | New picklist IDs |
| `label claim` | New fie…
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## Background
Aligning sets of coordinates and their pixel intensity data accurately between MSI and other modalities is often visually evaluated which is subjective but not uninformative. Other metr…
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Hi dear developer,
We have MSI data from MALDI-MSI-FT-ICR. We want to use you tool standalone. I have installed MATLAB r2016 (windows version), but I have this error when a run runSpectralAnalysis…
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HI, msiPL developer:
First of all, thank you for build this awesome tool.
I have a question about the representation of the 3D MALDI MSI data of mouse kidney (Figure 6f in the NC paper). Rece…
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I keep encountering this error:
```
Error uncompressing frame, error code: 18446744073709551606. File is either corrupted, or in a (yet) unsupported variant of the format.
```
when querying frames…
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Hi Sebastian,
I am currently working with massive `MassPeaks` lists of MALDI-FTICR data. By massive I mean
```
>length(e$msDataPeaks)
[1] 41371 # number of spectra
> mean(lengths(e$msDataPeak…