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Given a peak group that contains peaks for samples A, B, and C; in an experiment that also contains samples D and E, apply reextraction protocol to render a reextract peak for samples D and E.
This…
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After conducting the first round of mapping, the initial draft spreadsheet for `ChromatographyConfiguration` instances have been created. What is left:
- [x] @SamuelPurvine maps the DMS slots as best …
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Hi. I have standalone Visium data and Mass spec data (Bruker) from the same tissue block (mouse colon). Would it be possible to use the ```semla``` package to get common x-y co-ordinates from both dat…
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In quantms, for simple experiments, I would like to allow using SDRF only to specify the experimental design (incl. channels, replicates, fractions), not mass spec. related settings (and use nextflow …
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This is what is done in the `mass_spec` repo `mzkitcpp` DI functions.
Currently in maven, whole precursor m/z values are always used.
Basically, this should be implementing something like `mzkitcpp:…
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I was wondering if you might be able to provide any insights to my following problem.
We receive chemical compound formulae from some Mass Spec software (`Maven` or `El Maven`). There's always a c…
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massign structure has been changed.
```bash
$ bundle exec rspec
(snip)
Finished in 0.0096 seconds
47 examples, 11 failures
Failed examples:
rspec ./spec/ruby-hl-lvar_spec.rb:26 # Ru…
pocke updated
4 years ago
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Hi Vadim,
I generated a library for **phosphoproteomics** data analysis using DIA-NN 1.9. However, I’m not sure whether I should do some preprocessing before using the generated `report-lib.tsv` in a…
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### Describe the bug
1. List the steps someone needs to take to reproduce the bug.
Build a cam-se filter.
Set model_nml:state_variables to a set of variables that is "missing" one or more …
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**User story**
As a researcher, I want to view the curated m/z ratios for single 2D selection.
**Preferred solution**
Query .zarr source from vitessce and render list of annotated m/z for selec…