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Hi,
I am using CellChat-V2 for the analysis of stereo-seq (cell-bin) data. Could you provide guidance on how to estimate the 'spot.diameter' and 'spot' parameters within 'scale.factors', as these a…
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Hi Thom,
I remember listening to your bioformatics chat podcast (https://bioinformatics.chat/propr) a while back and recently dove into the literature on several compositional data analysis reviews/…
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https://mp.weixin.qq.com/s/5icE4th7HBALVahZcM1Ztw
ixxmu updated
1 month ago
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If you dig in their github repository you will likely find the data already summarised for you in form of R script for reproducibility, so you have to avoid the 95% of work in getting raw single-cell …
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So I have been receiving the following error when trying to plot a `cellchat` object computed from a `Seurat` object from spatial transcriptomics data (Visium 10x):
`Error in names(x)
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/annaladdach/CatsCradle
Confirm the following by e…
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Here is what the nextflow version is currently outputting in a transXpress_results folder in the working directory of the pipeline execution (using rnaSPAdes as an example):
```
0226_Chattonella_sub…
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When I run `attachment::att_amend_desc()` , it now removes the lines corresponding to Bioconductor packages in the Remotes field.
Before running it:
```
Remotes:
bioc::frma,
bioc::gcrma…
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I'm planning on using your wonderful Salmon tool v0.12.0 for generating TPM counts with a view to quantifying relative abundance of certain bacterial antibiotic resistance genes in my shotgun (human g…
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Hi team!
I have been using cellchat for about a year now with snRNAseq, and just started with spatial transcriptomics.
When I try to run createCellchat using version 2, I run into an issue that I…