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Hello,
I was wondering if your metabarcoding pipeline could be adapted to MionIon metabarcoding sequencing data. What is your opinion about it?
Greetings
Jaime
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Hi,
When working with metabarcoding data where you're not interested in any specific taxonomic group but want to quantify general diversity, you almost always have a mix of different genetic codes …
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Hi,
first I'd like to thank you for a great package. I have been using it for years.
To the problem:
A simple dataset:
```
library(phyloseq)
data(enterotype)
sub_enter
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If I understand the [vsearch documentation](https://github.com/torognes/vsearch/releases/download/v2.22.1/vsearch_manual.pdf) correctly, `vsearch --usesearch_global --maxhits 1` will only output the t…
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**Project Lead**:
+ [António Sousa](https://openlifesci.org/ols-3/projects-participants/#antonioggsousa)
**Mentor**:
+ [Hans-Rudolf Hotz](https://openlifesci.org/ols-3#hrhotz…
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Dear Ben,
I have conducted 16S metabarcoding for community analysis on 52 time series samples, performing two separate runs for this data. I would like to combine the results from these two runs in…
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A list of tool that can be considered if GBIF considers to produce own reference databases.
[RESCRIPt](https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009581) **Reproducible…
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From @laurabrenskelle: https://github.com/ioos/bio_data_guide/issues/265
> The [DNA-derived Data Extension page](https://ioos.github.io/bio_mobilization_workshop/edna-extension/) details how to use…
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I work as a bioinformatician at the Hakai Institute and I'm helping to develop best practices for submission of our eDNA experiments to OBIS. I had a look at the metabarcoding guidelines in this repo …
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Sorry for bringing this up very late, and we may have discussed this during the writing, but now that I'm in the process of submitting metabarcoding data, it becomes obvious that a field specifying se…