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A list of tool that can be considered if GBIF considers to produce own reference databases.
[RESCRIPt](https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009581) **Reproducible…
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**Project Lead**:
+ [António Sousa](https://openlifesci.org/ols-3/projects-participants/#antonioggsousa)
**Mentor**:
+ [Hans-Rudolf Hotz](https://openlifesci.org/ols-3#hrhotz…
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Hi,
When working with metabarcoding data where you're not interested in any specific taxonomic group but want to quantify general diversity, you almost always have a mix of different genetic codes …
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Following my extensive analysis of ILVOs BioSample metadata I should do the same on our emo bon ones
In particular
- do we use URLs whereever we can
- how do we refer to SOPs
- Is it clear from t…
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Sorry for bringing this up very late, and we may have discussed this during the writing, but now that I'm in the process of submitting metabarcoding data, it becomes obvious that a field specifying se…
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Dear Ben,
I have conducted 16S metabarcoding for community analysis on 52 time series samples, performing two separate runs for this data. I would like to combine the results from these two runs in…
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If I understand the [vsearch documentation](https://github.com/torognes/vsearch/releases/download/v2.22.1/vsearch_manual.pdf) correctly, `vsearch --usesearch_global --maxhits 1` will only output the t…
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### Who is requesting this?
IOOS Advisory Committee
### What is being requested?
Develop an inventory of what types of biological data are being collected, by whom, and where it is being stored.
#…
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I work as a bioinformatician at the Hakai Institute and I'm helping to develop best practices for submission of our eDNA experiments to OBIS. I had a look at the metabarcoding guidelines in this repo …
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Hello, I am working with COI metabarcoding data of 24 samples, and there are many zeroes in the data frame, as some zotus are not detected in certain samples. I am using the `transform_sample_counts` …