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Our metabolomics data does not contain the compartment in the bigg ID.
We need to modify `build.py` to append `_e` to the metabolite names.
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We should have a prototype of an SDRF definition for metabolomics data. EPMA will work with SDRF for the standard metadata for samples for proteomics and metabolomics, and in principle, the file forma…
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Hi.
I have three multi-omics datasets of RNA seq (vst normalization), DNA methylation (beta value) and plasma metabolomics.
I normalized my metabolite data with the total sum of all detected ions a…
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[Metabolomics Workbench](https://www.metabolomicsworkbench.org/) (MW) is an online resource that houses the NIH Common Fund's National Metabolomics Data Repository (NMDR) as well as related databases …
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"I would just add that there has not really been a consensus on where to put metabolomics data - something like GenBank would dramatically change the landscape for metabolomics data sharing"
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Hi there!
Thanks for your hard work on this package!
I'm trying it out on my metabolomics data currently with a high amount of missing values.
I was wondering if there was a way to make an equi…
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Hi!
I would like to try MultiMAP for integrating a variety of datasets on a specific protein family.
This includes classical omics data like RNA-seq or targeted metabolomics, and also structural inf…
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Catalog of climate-microbiome relationships
We will build a Linked Data component within the NMDC Data Portal for exploration of mechanistic microbiome processes underlying environmental processes,…
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When i do:
```python
from mspaint.plotter import Plotter
p = Plotter("plotly")
```
gives me:
```python
---------------------------------------------------------------------------
ImportErr…
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The data types are:
- proteomics
- metabolomics
- transcriptomics
- cohort/clinical
FuqiX updated
3 years ago