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Hi, I wonder any possibility identify core microbiome using microeco object? Like filtering based on the prevalence and abundance? Pls let me know!
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@TayteCampbell
I am running into lots of errors when I try to run your microbiome code. Can you please see if you're able to run it successfully?
Also, can you please comment your code so I (and …
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Fantastic opportunity and we're very keen to contribute! I'll set up a folder for the Australian Microbiome Initiative and provide links to all of our current ASV workflows (16S, 18S, fungal ITS), alo…
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##Branch
g1.02-studyExperiments
## Groups
Group 1 - Content Types | Ontology | Fields
## Describe
This issue provides the content types and fields expected for the Grassland Genomics gr…
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Hi vamb devs,
I have some small questions regarding the benchmarking in the vamb publication. I know this work was probably some years back and details blur. Hopefully I'm not bothering you too muc…
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The adult microbiome of healthy and otitis patients: Definition of the core healthy and diseased ear microbiomes – Maria Burton et al. – PlosOne
https://journals.plos.org/plosone/article?id=10.1371/j…
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https://docs.google.com/spreadsheets/d/17mEGpZC7jv5AngeQFqKiE7fUiZKjdBNpBnbEsAyEtEc/edit#gid=0
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**Description of the issue**
As part of the reporting for MICROBE WP3, we need to write a milestone progress report document for MS6: `Validation tools for assessing compliance with standards for mic…
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Microbiome analysis reveals gut microbiota alteration of early-weaned Yimeng black goats with the effect of milk replacer and age
https://pubmed.ncbi.nlm.nih.gov/33789672/
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All functions implemented in CoNekT Grasses Microbiome must have associated test data.
Current plans involve including rice and maize data from two manuscripts, respectively:
* [Santos-Meddellin et a…