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Transferring from email thread to this ticket.
Michael wrote on 2016-09-15:
There was a request to classify the PMCOA corpus according to more
topics than just Biology, Medicine, Genetics, Geno…
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1800 model organisms are updated per release -- how many are actually used in the community?
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Tried to search for "Topic: Model organisms" and wanted to add "Topic: Proteomics" to the search but the first search item was removed.
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Currently the gene associations are interleaved with the reaction database. This makes it hard to use shared reaction databases for different organisms. @keitht547 suggested moving the gene associatio…
jonls updated
8 years ago
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**Name**
Jessica Chong
**Email**
jxchong@uw.edu
**GitHub Username**
@jxchong
**Details**
Page: /HGNC:19044
Browser: Safari 17.2.1
Device: Apple Macintosh
OS: Mac OS 10.15.7
Engine: WebKit 605.1.15
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Idea: find a few examples of homology RRIs in human and mouse training data. Homologe x of the mouse can be then tested if it will be correctly predicted by the 'human model' and vice versa.
TODO…
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Hi,
I was wondering if the `ataqv` also works for non-model organisms.
Best
F
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Hi.
Is there a way to alter the filtering to gain more small genes? We are missing most of a whole class of genes in a plant. These genes are about 200 amino acids long. Will changing --min-coding-…
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The page https://pachterlab.github.io/kallisto/starting says "we have placed some transcriptome fasta files for human and model organisms here", linking to http://pachterlab.github.io/kallisto/transcr…