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zhanglab
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psamm
Curation and analysis of metabolic models
https://zhanglab.github.io/psamm/
GNU General Public License v3.0
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Update setup.py to use pandas 2.0 and up
#276
yingzhanguri
closed
1 year ago
0
Change pd.append to pd.concat for pandas 2.0
#275
zhenjiaofenjie
closed
1 year ago
0
Change pd.append to pd.concat for pandas 2.0
#274
zhenjiaofenjie
closed
1 year ago
1
Updated docs building and installed pyaml in travis.yml
#273
yingzhanguri
opened
4 years ago
1
Multimedia
#272
keithdt
closed
4 years ago
0
merge-master-into-develop
#271
keithdt
closed
4 years ago
0
Release
#270
yingzhanguri
closed
4 years ago
0
Release 1.0
#269
keithdt
closed
4 years ago
0
Test-build-branch
#268
keithdt
closed
4 years ago
0
Primarypairs ambig develop
#267
keithdt
closed
4 years ago
0
Primarypairs ambig
#266
keithdt
closed
6 years ago
0
Primarpairs ambiguous reaction printing
#265
keithdt
closed
6 years ago
0
How to add reactions identified by gap fill to model
#264
mmundy42
closed
4 years ago
1
Tutorial v0.31 update
#263
keithdt
closed
7 years ago
0
Complete path
#262
keithdt
closed
6 years ago
1
Add primarypairs command
#261
jonls
closed
7 years ago
0
Added xlsxwriter to required packages for install.
#260
keithdt
closed
7 years ago
0
moma: Fix invalid call to non-existent method
#259
jonls
closed
7 years ago
0
MOMA in genedelete command
#258
bishopbrian25
closed
7 years ago
0
MOMA module
#257
jonls
closed
7 years ago
0
Forward solver errors and raise error on non-optimal solutions
#256
jonls
closed
7 years ago
0
Fix unicode error in fastcore
#255
jonls
closed
7 years ago
0
Improvements to Formula
#254
jonls
closed
7 years ago
0
formula: Implement additional dict-like methods
#253
jonls
closed
7 years ago
0
sbml: Fix sphinx references in docstrings
#252
jonls
closed
7 years ago
0
Integrate psamm-import
#251
jonls
closed
7 years ago
0
sbml: Write zero value as 0 instead of 0.0 for exchange
#250
jonls
closed
7 years ago
0
native: Add methods + tests for _OrderedEntrySet
#249
jonls
closed
7 years ago
0
Expand ModelEntry with id override and setters
#248
jonls
closed
7 years ago
0
sbml: Allow access to SBML annotations
#247
jonls
closed
7 years ago
0
sbml: Add SBML prefix to entity classes
#246
jonls
closed
7 years ago
0
sbml: Use cElementTree if possible
#245
jonls
closed
7 years ago
0
Travis: Use Ubuntu Trusty as distribution
#244
jonls
closed
4 years ago
0
setup.py: Make excelexport entry point depend on xlsxwriter
#243
jonls
closed
7 years ago
0
Perform additional SBML model conversions
#242
jonls
closed
7 years ago
0
native: Provide repr for common classes
#241
jonls
closed
7 years ago
0
fastgapfill: Fix bug where epsilon was not used
#240
jonls
closed
7 years ago
0
gapfilling: Fix performance issue when adding reactions
#239
jonls
closed
7 years ago
0
fastcore: Document return values from functions
#238
jonls
closed
7 years ago
0
By default, ignore boundary species in SBMLReader
#237
jonls
closed
7 years ago
0
fastcore: Improve API docs for fastcore module
#236
jonls
closed
7 years ago
0
docs: Attribute documentation to PSAMM developers
#235
jonls
closed
7 years ago
0
Update tutorial for latest release
#234
jonls
closed
7 years ago
0
03 2017 tutorial update
#233
keithdt
closed
7 years ago
2
sbml: Properly parse FBCv2 limits when creating model
#232
jonls
closed
7 years ago
0
console: Simplify by only including one model
#231
jonls
closed
7 years ago
0
Add command to operate on SBML files directly
#230
jonls
closed
7 years ago
0
sbml: Extend FluxBoundObjective with constants
#229
jonls
closed
7 years ago
0
gapfilling: Extend docstrings with model type information
#228
jonls
closed
7 years ago
0
excelexport: Fix writing limits
#227
jonls
closed
7 years ago
0
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