-
Currently the motif enrichment considers all motif matches that have a FDR < 0.05 While this threshold can be adjusted in the internals it is not a parameter in the user-facing enrichment function.
-
DOD (definition of done):
- [ ] Rôles: Helpeur, Modérateur, Admin, Super Admin, Managers (Légal, Illégal, staff)
- [ ] No Clip (possibilité d'accelerer, et de le faire avec un véhicule)
- [ ] Tél…
-
Dans la déclaration Index, le libellé des motifs d'incalculabilité est à modifier :
**Ecart de rémunération :**
- [x] Remplacer par "Effectif des groupes retenus inférieur à 40% de l'effectif pris …
-
Hey there,
I checked the extdata folder installation steps and both github and my computer cluster's extdata folder and the file named **eclip_scott_top_motif_intersect_new.txt** is not found and r…
-
Hi, I have created a chicken TF reference database and completed the pySCENIC analysis in my chicken data.
But I find a problem in my result from pyscenic ctx program output file:
![微信图片_20241017…
-
Hi,
I'm trying your pipeline with mouse ATAseq data and the TFs database HOCOMOCO V12 ( [non-redundant motif subset](https://hocomoco12.autosome.org/final_bundle/hocomoco12/H12CORE-CLUSTERED/H12CORE-…
-
Just a question about motif searching and data quality.
Our data is called using dorodo and we called the bedmethyls with modkit pileup
We tried using the defaults but consistently got output l…
-
Dear author,
I have downloaded motif files from JASPAR database and the format is like:
```
>MA0002.3 Runx1
A [ 123 57 0 87 0 17 10 131 500 ]
C [ 1072 …
-
Thanks for providing the SCENIC+ public motif collection PWMs , it is very helpful !
I noticed that the version of the motif collection is "V10: 2022 SCENIC+ clustered motif collection (v10nr_clust…
-
Hi everyone,
is it possible to specify multiple contigs like: **'contigmap.contigs=[12-20/B14-16/1-5/B18-20/1-5]'** when scaffolding a motif?
I have an active site which is made by non continous …