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Hi! I am using tf-modisco lite on data generated using chrombpnet. I generated the modisco.h5 file and want to now generate the report. Is it still possible to generate the report using the command `m…
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In the white paper "Matrix Profile XX: Finding and Visualizing Time Series Motifs of All Lengths using the Matrix Profile", section 3 demonstrates the Pan Matrix Profile with string data, however this…
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Hello, when I was running `computeDeviations` in the following code, an error occurred:
> dev traceback()
17: stop(e)
16: value[[3L]](cond)
15: tryCatchOne(expr, names, parentenv, handlers[[1L…
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Hello,
Thanks again for putting together RBPNet. I've been using some of the pre-trained models from the paper as a basis for transfer learning within a number of new models to some success. When …
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### Setup
I am reporting a problem with Biopython version, Python version, and operating system as follows:
Biopython: 1.78
python: 3.8.3 (default, May 19 2020, 18:47:26)
OS: CPython/Linux-5.4.7…
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RSAT `position-analysis` detects k-mers that present any type of positional heterogeneity by running, for each k-mer, a chi-squared homogeneity test on its profile of counts per positional windows com…
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Hi,
Thank you for developing the excellent `TRGT` tool. I've read your paper "_Resolving the unsolved: Comprehensive assessment of tandem repeats at scale_". To gain a better understanding, I've als…
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Hi,
I am trying to use msCentipede on a ATAC-seq time course series without success. I get an error when running a command like
python call_binding.py --task learn --protocol ATAC_seq testbk/Ctcf_…
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```
❯ docker run --rm\
-v /mnt/nvme-1/2-hubmap/spatial/ref-scrna/data/ft:/app/data\
-v /mnt/nvme-1/2-hubmap/spatial/ref-scrna/out/ft:/app/out\
-v /mnt/nvme-1/2-hubmap/sc-transmogrifier:/app/sc-…
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I an getting error while running step2, runChromVAR om mESC data. I have loaded seurat and signac versions as given in tutorial.
library(Seurat, lib.loc = "~/R/seurat_v4_library")
library(Signac, li…