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Hey, thanks a lot for this wonderful package. I've been experimenting with it, and the results have been very accurate according to the pathologists.
I have a question about the size of the single-…
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In the published article, the object for analysis is described as “the dataset must be formatted as an R Seurat object and contain cells annotated by cell types and by the two conditions on which the …
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Well hello there, I just stumbled upon this repo. I actually just made a pull request to EWCE to add a number of useful features, including "ingest_data" which can take in scRNAseq data from any speci…
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I'm following [Bassez](https://carmonalab.github.io/ProjecTILs_CaseStudies/Bassez_BC.html) tutorial. However, during classification step I encounter the following error:
```
> DefaultAssay(ref_cd8…
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Hi,
I have some scRNAseq data that I ran through the scUTRquant pipeline and would like to now calculate the LUI for the transcripts. Is there a pipeline or some code from the authors I might be ab…
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### Expected behavior
A new user should be able to know which UI components can be clicked to spawn a drilldown UI.
### Actual behavior
Nothing distinguishes clickable UI from non-clickable UI.
…
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I am using cellxgene for single-cell data analysis. Suppose I have a new dataset x.h5ad, how can I map its cell types to the cell types in cellxgene?
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Sorting by `projectDescription` fails to properly sort all results.
```
$ http 'https://service.azul.data.humancellatlas.org/index/projects?size=30&catalog=dcp37&order=asc&sort=projectDescription&…
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**User story**
I'd like to be able to explore the composition of cell types within a subregion of my dataset, say by manually selecting a region in a scatterplot and then viewing an obsSetSizes plot …