-
Hello
I am trying to run ms2rescore but get the following error :
```
Reading PSMs from file...
Reading PSMs from PSM file (1/1): `C:/Users/ofm83/OneDrive/Documents/Megaphobema_perterklaasi/o…
-
Hello,
I got an issue during the MSBooster process:
java.lang.NullPointerException
at External.KoinaModelCaller.assignMissingPeptidePredictions(KoinaModelCaller.java:465)
at Fe…
-
Hi,
Thank you for developing MS2PIP.
[diann_001.txt](https://github.com/compomics/ms2pip/files/15249813/diann_001.txt)
I have a pre-digested (trypsin) FASTA file and I want to create an in sil…
-
**Describe the bug**
AlphaPept model is not available.
**To Reproduce**
```
(oktoberfest-env) tobiasko@fgcz-c-072:/scratch/cpanse/PXD028735/oktoberfest$ python -m oktoberfest --config_path spe…
-
Hi,
I am trying to use ms2Rescore to rescore the output i get from a searchGUi / peptideshaker analysis
here is the log of ms2rescore in debug mode
```
Running DeepLC for PSMs from run (1/1): `5…
-
I'm getting an uncaught exception when trying to use ms2rescore.feature_generators.ms2pip.DeepLCFeatureGenerator. The error happens when there are not enough peptides in psm_list for the calibration s…
-
The description of hackathons could be more homogeneous. Even though the writing may closely derive from an abstract written by a different author/organizer, it should have a common section each time:…
-
Dear developers,
I have used Oktoberfest to generate a Spectral Library from a .fasta file, however, there is no proteinID information in this Lib. I have checked the settings few times, still didn…
-
Hey. I'm setting up FragPipe to run headless on my institution's Linux cluster and am running into some issues with unexplained errors. I have run this same exact workflow on a different Linux compute…
-
This feature request came up in https://github.com/nf-core/mhcquant/issues/317
Currently, the xgboost models are always downloaded to `$HOME/.ms2pip`. In some cases that could lead to permission is…