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Summary of MTAG results:
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Trait # SNPs used N (max) N (mean) GWAS mean chi^2 MTAG mean chi^2 GWAS equiv. (max) N
1 ...peline/QC/trait1.txt 5820480 …
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Hi there,
I got the ValueError like below when I ran the following;
python mtag-master/mtag.py --sumstats data1.txt,data2.txt --p_name pval_raw --out mtag-master/OA_chr --use_beta_se --beta_name…
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Hello~ We are performing meta-analysis with mtag but get an output file without the N column. Is there any setting we can obtain it? The MTAG codes are listed as follows:
./mtag.py \
--force \
-…
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Revisit GCAM/Docker, briefly.
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This ticket keeps track of existing eQTL fine mapping methods -- please use new comment for additional references so that I can be notified to add here and to my mendeley:
1. Davis, Joe R., et al.…
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Some background context:
- For a while, I've been looking at and investigating rust-analyzer performance issues.
- @Wilfred, @darichey, and I all work together, and our employer is paying us to imp…
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Hi,
This is something we briefly discussed earlier.
We are trying to create a single manhatten plot by combing .gz files of the sumstats obtained from 15 different phenotypes.
What I'm currently …
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Hi users and developers,
Many thanks in advance for your time and help.
I am computing MTAG for four traits and, surprisingly, I get an FDR of 41%. However, the FDRs of each of the traits in t…
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Dear Omeed,
I have two phenotypes that are moderately correlated (rho = 0.6). Therefore, I used MTAG to boost the power of my single-GWASs. However, when inspecting the results, I see that some of …
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Hi, sorry for so many question,
but I am really interested in your method.
I wanted to double check with you the intercept you refer to in the paper and make sure my interpretation is correct.
belo…