-
Apologies in advance if this is obvious..I am new!
I am using flowcraft via WSL2 (Ubuntu 20.04; singularity 2.5.2; i7 10th gen laptop with 16Gb RAM). Following the issues already noted, I downgrade…
-
Hello,
I am trying to produce an ancestral.fasta file to be used to build single population SFS.
I am encountering the error `-argument is unknown will exit` for two different arguments, dependi…
-
Hi EGPAx team,
I am looking forward to the release of the EGPAx public version in the future.
Recently, I tried running a test using the following command:
```
python3 ui/egapx.py ./examples/in…
-
I am just starting to put this together. The basic idea is that when exploring
NGS data that comes to you in a BCF file, there are lots of ways you might want to
tweak it in the process. For examp…
-
Greeting,
I'm trying to integrate StrainXpress into [LMAS](https://github.com/B-UMMI/LMAS), a nextflow workflow enabling the benchmarking of traditional and metagenomic prokaryotic de novo assembly…
-
Hi Matteo,
I was trying ngsFst for getting some Fst estimates that was mentioned in [this paper](https://doi.org/10.1534/genetics.113.154740). My motivation trying this was I can't find any clean o…
-
I am currently helping somebody to build the code and we solved some build issues by building the tool set into a Singularity/Apptainer container:
```
Bootstrap: docker
From: ubuntu:20.04
%post
…
-
Hello,
I did SNP calling with GATK (HaplotypeCaller, CombineGVCFs and GenotypeGVCFs) and as a result I have a final with all snps after applying several filters.
Now I would like to use this ma…
-
https://github.com/mfumagalli/ngsTools
-
hi.
How do I visualize the 2D-SFS produced by this software?
According to MFumagalli's tutorial (https://github.com/mfumagalli) . I try to get 2 D-SFS using the following script,
Rscript $NGSTOOLS…