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assemblerflow
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flowcraft
FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:
GNU General Public License v3.0
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MaxBin2 outputs
#237
UniAlberta
opened
1 month ago
0
Add more component
#236
ayooluwaB
opened
1 year ago
0
bwa gatk not found
#235
Rohit-Satyam
opened
1 year ago
0
Adding to Galaxy?
#234
ajkarloss
opened
3 years ago
0
Errors with spades
#233
drpturner
opened
4 years ago
18
Errors when using option -m broadcast
#232
redbull05689
closed
4 years ago
1
add ConFindr
#231
cimendes
opened
4 years ago
0
New additions in flowcraft/templates not updated after build and inst…
#230
parvsachdeva
opened
4 years ago
1
New additions in flowcraft/templates not included/updated after build and install
#229
parvsachdeva
opened
4 years ago
0
Nextflow "set" input has been discontinued
#228
cimendes
opened
4 years ago
0
Hackathon
#227
ODiogoSilva
closed
5 years ago
1
Update trimmomatic containers to version 0.39-1
#226
cimendes
opened
5 years ago
1
using my own Docker from Gitlab
#225
AKWB
opened
5 years ago
9
Fix for #219 - Bad python2 file lost in the bin folder
#224
cimendes
opened
5 years ago
1
update with changes in dev
#223
cimendes
closed
5 years ago
1
Fix downsample
#222
cimendes
closed
5 years ago
1
Moved template file to proper location
#221
t0rrant
closed
5 years ago
3
Unable to obtain final report for simple assembly pipeline
#220
rfm-targa
opened
5 years ago
1
Python3 syntax errors
#219
t0rrant
opened
5 years ago
3
Integrity coverage fails
#218
TheSequencingCenter
opened
5 years ago
15
Bash errors when running nextflow with latest version (19.07.0)
#217
cimendes
opened
5 years ago
2
add copyright information
#216
cimendes
opened
5 years ago
1
Change docs instructions from using 'templates' as submodule
#215
cometsong
opened
5 years ago
1
Create CODE_OF_CONDUCT.md
#214
tiagofilipe12
closed
5 years ago
1
Added hisat2 component
#213
PhilPalmer
opened
5 years ago
1
Added hisat2 component
#212
PhilPalmer
closed
5 years ago
1
Set phred encoding when it fails to be determined - trimmomatic
#211
cimendes
closed
5 years ago
2
remove optional true
#210
cimendes
opened
5 years ago
1
Dag files
#209
cimendes
closed
5 years ago
2
merge dev branch
#208
cimendes
closed
5 years ago
0
Update to version 1.4.2
#207
ODiogoSilva
closed
5 years ago
1
Added components for gatk
#206
PhilPalmer
closed
5 years ago
1
Lifebit
#205
PhilPalmer
closed
5 years ago
1
added manifest information to the `nextflow.config` file to allow for remote execution
#204
cimendes
closed
5 years ago
2
ectyper component
#203
cimendes
opened
5 years ago
0
mobsuite component
#202
cimendes
opened
5 years ago
0
Flowcraft report instructions
#201
jacarrico
opened
5 years ago
0
update den-im branch to the latest version of dev
#200
cimendes
closed
5 years ago
0
Update - version 1.4.1
#199
cimendes
closed
5 years ago
1
Update utils.py - fix regex
#198
cimendes
closed
5 years ago
1
Merge miguelpmachado dev branch with flowcraft innuendo branch
#197
bfrgoncalves
closed
5 years ago
1
momps and mlst: remove collect from report to avoid overwriting previous results when a pipeline is resumed
#196
cimendes
closed
5 years ago
3
momps, mlst results overwrite when pipeline is resumed
#195
cimendes
opened
5 years ago
1
generated pipelines incompatible with nextflow's pipeline sharing
#194
cimendes
closed
5 years ago
4
true_coverage module in innuca recipe
#193
cimendes
opened
5 years ago
0
remove trimmomatic log
#192
cimendes
opened
5 years ago
1
Update to Innuca's recipe modules
#191
cimendes
opened
5 years ago
1
Add SeqSero2 and stx subtyping
#190
miguelpmachado
closed
5 years ago
5
Automatically set local executor CPU limit
#189
bfrgoncalves
opened
5 years ago
1
Mash dist fixes
#188
tiagofilipe12
closed
5 years ago
2
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