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Bruker outputs OME.tiff files after the ripper has completed but only the first image that's written is the `OME.tif` master file. This contains any additional channels that are recorded at the time.…
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I'm currently trying to upload a dataset, and if there's a validation error it's a bit tricky to understand what went wrong and how I can fix it. The output looks like this:
```
PATH …
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@constantinpape @joshmoore
I started coding and I am optimistic that I will manage to read the zarr files directly, without using the xml.
Could we please (even without having a specification yet) …
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**Background:** Earlier version of the tiff-to-zarr `convert` command would write all of the micromanager image plane metadata to text files. Micromanager writes metadata for each plane, so the result…
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At the BIDS-ComputationalModels meeting, it became pretty clear that a wide range of applications require (or would at benefit considerably from) the ability to read in generic n-dimensional arrays fr…
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1. Within the runner:
* Every time an image is created, perform this check. Note: this also includes checking places where we `.append` to the image list
* Forbid edits of an image `path`/`z…
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## Update input API & output handling for:
### Simple updates:
- [x] Cellpose segmentation: ParallelTask, does not generate outputs
- [x] Apply registration to image: ParallelTask. Input type is …
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Hi there!
Great tool! Many thanks for building it!
I've imported my `bioformats2raw` converted ome-ngff using
`from fractal_tasks_core.tasks.import_ome_zarr import import_ome_zarr`
and I also…
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At the recent [Next generation bioimage analysis workflows hackathon](https://www.ema.uzh.ch/en/register/biovisioncenter-hackathon.html) in Zürich, a few other OME-Zarr converters were worked on. Afte…
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Hi,
The BioImage.IO team will meet every Wednesday 4PM CET, [check the next meeting in your time zone](https://arewemeetingyet.com/Stockholm/2022-07-13/16:00/w/BioImage.IO%20Weekly%20Meeting#eyJ1c…