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Hi,
I'm not so clear what the evaluation function does (the document is not super clear). Does it evaluate the extraction I got (how)? Can it evaluate my own schema and output? What are the paramet…
kluo9 updated
6 months ago
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I'm trying to use [OntoGPT](https://github.com/monarch-initiative/ontogpt) for information extraction, which is a tool that requires a schema input in LinkML format. I'd love to use PO, but I've been …
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In discussion with RNA-KG group (Marco Mesiti, Elena Casiraghi, Emanuele Cavalleri) and @justaddcoffee -
we would like to be able to extract triples (s, p, o) from a provided text, using graph embed…
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Hello,
I'm looking for a way to perform grounding using a domain-specific ontology stored locally in .owl format. Is it possible? If so how to do it?
Thank you!
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I would like to suggest to create a single page which provides
1. A list of essential tools for all Ontology curators to have installed
2. Some basic instruction to install these
We created som…
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The multilingual analysis function doesn't use the output exporters in the CLI.
It should be able to use those options rather than opening its own output file - minimally, it should be able to append…
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`pubmed-extract` appears to create a prompt for each character in the title/abstract when provided a Pubmed ID. For example, when providing [PMID:37666660](https://pubmed.ncbi.nlm.nih.gov/37666660/) (…
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Trying to pull in the PDF from this article throws the below error: https://onlinelibrary.wiley.com/doi/10.1002/eco.1705
This has been tested on other PDFs to the same end.
```
ontogpt -vvv ext…
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Running OntoGPT latest version in Poetry shell 3.12. It seems to be ignoring the json formatting flag. HTML formatting works correctly.
The command:
`ontogpt extract -t ../trek.yaml -i "Shantz a…
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Add possibility of using several different LLMs, this may need to happen in OntoGPT