monarch-initiative curate-gpt issues

monarch-initiative / curate-gpt

LLM-driven curation assist tool (pre-alpha)

https://monarch-initiative.github.io/curate-gpt/

BSD 3-Clause "New" or "Revised" License

48 stars 11 forks source link

issues

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duckdb_adapter implementation

#44 iQuxLE opened 1 day ago
0
uniprot loader

#43 cmungall opened 2 days ago
0
Switch out backend abstraction layer for linkml-store

#42 cmungall opened 5 days ago
0
Auto-KB: Adding more automation functions

#41 cmungall closed 2 weeks ago
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Update README.md

#40 cmungall closed 2 days ago
0
Get model context details from `litellm`

#39 caufieldjh opened 1 month ago
0
Allow gpt-4o

#38 cmungall closed 1 month ago
2
switch to using linkml-store

#37 cmungall opened 2 months ago
0
Add command to load existing embeddings into a collection

#36 justaddcoffee opened 4 months ago
0
BYOE bring your own embeddings

#35 justaddcoffee closed 1 month ago
2
Consider the use of a standard wrapper for vector databases and chaining RAG operations

#34 cmungall opened 4 months ago
0
Support triple extraction use case

#33 caufieldjh opened 4 months ago
3
Evaluate groq

#32 cmungall opened 4 months ago
1
Adding --jsonpath option to index command.

#31 cmungall closed 4 months ago
0
Orthology recapitulation experiments with Carlo

#30 justaddcoffee opened 4 months ago
0
Added docs dependencies and `cruft update`

#29 hrshdhgd closed 4 months ago
0
Add a chat interface

#28 cmungall opened 4 months ago
0
Figure out chromadb slowness issues

#27 cmungall opened 4 months ago
1
Include examples for using the annotate command

#26 cmungall opened 4 months ago
0
Experiments to see if LLM embeddings can recapitulate subsumption

#25 justaddcoffee opened 5 months ago
0
Add azure openai services client support

#24 lucinvitae opened 5 months ago
2
Chat interface uses incorrect OpenAI API key

#23 caufieldjh closed 5 months ago
4
Adding venomx dependency

#22 cmungall closed 4 months ago
0
Bypass OpenAI server overload and HTTP 500 Error #20

#21 iQuxLE opened 5 months ago
0
Bypass OpenAI server overload and HTTP 500 Error

#20 iQuxLE opened 5 months ago
0
Warn user when skipping prompt that is too long

#19 justaddcoffee opened 5 months ago
0
Unit tests failing

#18 justaddcoffee opened 5 months ago
2
Change GH actions python version

#17 justaddcoffee closed 5 months ago
4
Added documentation on using other models via litellm.

#16 cmungall closed 5 months ago
4
Consider switching to litellm

#15 cmungall opened 5 months ago
0
Activate Bugbear rules

#14 hrshdhgd closed 6 months ago
0
Create phenopackets from clinical case reports (WIP)

#13 justaddcoffee closed 6 months ago
1
Format code using `tox`

#12 hrshdhgd closed 7 months ago
1
Bypass OpenAI server overload

#11 iQuxLE closed 5 months ago
4
Should 'GPT' be used in the app name?

#10 jseager7 opened 7 months ago
1
consider chromadb alternatives

#9 cmungall opened 8 months ago
0
load-db-hpoa_by_pub should stream output

#8 cmungall opened 8 months ago
0
removing replicate

#7 realmarcin closed 9 months ago
0
Update

#6 oneilsh closed 9 months ago
0
Adding a wrapper for mediadive

#5 cmungall closed 9 months ago
0
use agent-smith-ai to wrap additional endpoints

#4 cmungall opened 10 months ago
0
Adding a reusabledata.org wrapper

#3 cmungall closed 10 months ago
0
Consider https://simonwillison.net/2023/Sep/4/llm-embeddings/

#2 cmungall opened 10 months ago
1
initial commit

#1 cmungall closed 11 months ago
0