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* pharokka version: 1.4.1
* Python version: 3.10
* Operating System: Linux
### Description
2023-12-20 15:18:04.879 | INFO | input_commands:check_dependencies:529 - Pyrodigal version is v3.…
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LSB Version: :core-4.1-amd64:core-4.1-noarch
Distributor ID: RedHatEnterpriseServer
Description: Red Hat Enterprise Linux Server release 7.9 (Maipo)
Release: 7.9
Codename: Maipo
Hello! I though…
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Hi,
I'm trying the `multibinning` and am getting the below error:
```bash
2024-02-25 22:45:10 n80546.nbi.ac.uk SemiBin[66519] INFO Setting number of CPUs to 512
2024-02-25 22:45:10 n80546.nbi…
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Hello,
Testing out illumina files and running into this error:
(metacerberus) pck@LSE315-PK:~/metagenome_seq$ metacerberus.py --prodigal ~/metagenome_seq/ --illumina --meta --dir_out test
HMM: …
pck00 updated
8 months ago
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* pharokka version: pre v1.5.0
* Operating System: Linux/MacOS
From @Taiwomercy here https://github.com/gbouras13/pharokka/issues/235#issuecomment-1732455157.
Hi, I am trying to specify that …
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Hi,
I'm working with @bebatut on updating the Galaxy Wrapper for SemiBin. There was a problem using SemiBin multi_easy_bin with the parameter --no-recluster.
```
SemiBin multi_easy_bin \
--sepa…
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### Which domain(s) should be blocked?
```
2.matomo-technikelfe.com
a.uytrack.com
aly.tripudio.it
an.cleverreach.net
an.mprolabs.xyz
an.mukundasoftware.com
ana.avmax.online
ana.kostenpost.nl
…
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**Describe the bug**
A clear and concise description of what the bug is.
**Input**
rgi main -i homolog.fasta -o output --clean -g PYRODIGAL -a diamond --debug --num_threads 10 --local > run.log 2…
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Step 5b fails when attempting to index fasq files. Full traceback:
Traceback (most recent call last):
File "/Users/xxxx/mambaforge/envs/metacerberus/bin/metacerberus.py", line 693, in
sys…
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I am comparing binners, and am using the concatenated assembly from VAMB's CodeOcean repo for reproducibility reasons, obtainable from
https://codeocean.com/capsule/1017583/tree/v1
under `data…