-
Hi,
I'm looking at the and product of CAT, run only using TransMap and excluding the indel classification `r.extend(find_indels(tx, psl, aln_mode))`.
I'm now trying to build a table of orthologs…
-
**Describe the bug**
Hello, I'm trying to run SCENIC+ using SnakeMake in a linux machine (centos 9), on the tutorial dataset.
I ran scATAC-seq preprocessing in python (using pycistopic, using the tu…
-
if A is orthologous to Y
and
B is orthologous to Y
then A and B are paralogs
-
Hi all,
I have the encoding error and I have no idea, where it is coming from, as I should not have any unusual symbols.
```shell
Building DAG of jobs...
Using shell: /usr/bin/bash
Provided c…
-
Hello! Thank you so much for developing such an amazing tool :)
I would like get some clarification on what `input_data` should be for running the snakemake pipeline (Tutorial [Step 4: Run SCENIC+ …
-
Hello,
I have a question regarding the subsampling strategy used at higher nodes to save on gene tree calculation time: is it purely random or there are some other criteria used as well. Also, when…
-
Hello @MichaelHiller and @kirilenkobm ,
I would like to know if it is feasible to compile a table of gene families by merging orthologsClassification.tsv for certain species. I noticed that one of …
-
- [x] Figure out date for initial discussion
Tagging @ukemi and @loricorbani
-
**Name**
Tim Putman
**Email**
timeput@gmail.com
**GitHub Username**
@putmantime
**Details**
Page: /overview
Browser: Chrome 118.0.0.0
Device: Apple Macintosh
OS: Mac OS 10.15.7
Engine: Blink 118.0.…
-
This was created from a conversation @ukemi and @sierra-moxon , making explicit an implicit task.
geneontology/gopreprocess#9
kltm updated
7 months ago