-
HI guys
It is not an issue it a question regarding enrichmenet analysis.
Do you recommend running pathway analysis without FDR cutt-off so it is independent of DGE genes?
I am a bit new to rna…
-
Utilizing Pipeliner output, perform pathway analysis in two ways:
1. Pathway analysis msigdb - Performs GSEA and/or ORA analysis using [msigdb](https://www.google.com/search?q=msigdb&rlz=1C5GCEM_enUS…
-
I can run ggpicrust2 with the provided example data (but not plot it, made a separate entry for that #101) but I am struggling to get it work with my own data.
Here is my code
```r
library(read…
-
> for bug reports and errors please report the output of: ./gapseq test
Hi,
This is an amazing tool!
I am doing a comparative metabolic analysis among several species of symbiotic bacteria, a…
-
We are currently using Atlas 2.14.0 and WebAPI 2.14.0 via docker container images, the authentication seems to be working properly, I can login to the site and I can see that I'm logged in:
![image…
-
Do we have any workflow for pathway enrichment analysis based on GWAS data?
Thanks.
-
Hello,
Did anyone try pathway analysis with GAGE and Pathview using Sleuth results (`results_table.csv` where column names are: target_id, test_stat, pval, qval, rss, sigma_sq, tech_var, mean_obs, …
-
Hi,
I am having an issue in the pathway annotation in ggpicrust2. I have tried the other workflow with the same results. I'm not behind a firewall or proxy, I can access the url on my browser and hav…
-
Others to check:
* clusterprofiler/DOSE (DONE)
* DAVID
* PANTHER
* ENRICHR
* FGSEA::FORA (DONE)
* GOseq
* IPA: Ingenuity Pathway Analysis
* BINGO
* ClueGO
* KAAS
* KOBAS
* WebGestalt
* g:…
-
Hello, I am a student of biomechanics from Brno University of Technology and I read your article where you use IFM calculator. It looks like a great method for my numerical analysis, but I have a prob…