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Hi there,
First time phyloglm user here, so apologies for my newbie questions!
1. Following a previous question here about interpretation of alpha, I have rescaled my input phylogeny so that the…
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**Context**
Example use case / job story 1: "when I am looking at an outbreak cluster, I want to copy the names of closely related samples so I can go look them up" (without having to transcribe …
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https://www.checklistbank.org/dataset/125101/about
- [x] Metadata
**WOL: The World Odonata List**
Version / Issued: 0.29.6 / 2022-12-08
Description:
The World Odonata List (WOL) is being man…
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Hope this is the right place for this issue.
Anyway, as part of our [Qiita archive releases](https://qiita.ucsd.edu/) (More Info -> BETA: download Archive files) we are building trees that contain…
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Requested by @NicolaDM
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I've noticed I'm not entirely sure myself how the phylogenetic placement algorithm works exactly and the docs don't contain the details I'm interested in.
Open questions:
- Do we treat tails diffe…
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Hello Team,
When I'm trying to place a sequence into the tree on Linux, I got en error `Aborted (core dumped)` without any error information.
And I tried the same data and command on MacOS, core dum…
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### Current Behavior
When running `augur clade` command the JSON file produced only has a partial list of assigned clades, with the remaining showing as "unassigned". When using the `--reference` opt…
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Dear @priesgo
While going through the pipeline, I realized that the VCF2FASTA does not masks the regions of low coverage. In amplicon sequencing data, there might be regions deprived of reads. I t…
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Hi
Firstly, thanks for developing such a great tool! I've had an odd issue occur whereby some zero-length branches in the reference tree get replaced with a branch length of 0.1053605157 in the epa…