matsen pplacer issues - Githubissues

matsen / pplacer

Phylogenetic placement and downstream analysis

http://matsen.fredhutch.org/pplacer/

GNU General Public License v3.0

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issues

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Dockerfile Fix

#382 davidrich27 opened 3 months ago
0
rppr reroot failure

#381 lpipes closed 5 months ago
4
Fatal error: exception Failure("Tax table broken: tax_id 1 had established parent 117570 but 117571 is claiming to be the parent.")

#380 lpipes opened 11 months ago
0
Uncaught exception: Failure("please specify a tree model with -s or -c")

#379 CaroleBelliardo opened 1 year ago
0
updating ocaml-mcl to latest mcl version

#378 micans opened 1 year ago
0
issues with compilation

#377 kbipinkumar opened 1 year ago
3
Uncaught exception: Simple_json.Undefined_key("n_cats")

#376 yifeng-evo opened 1 year ago
2
Build breaks: Error: This expression has type Lexing.lexbuf

#375 yurivict opened 1 year ago
1
Pplacer using tree from Fasttree

#374 PaulaCat opened 2 years ago
0
fix url

#373 alienzj closed 2 years ago
0
better error message for `bad suffix`

#372 AlessioMilanese opened 4 years ago
0
Where can I find GPL-3 version of guppy and rppr

#371 tillea closed 4 years ago
1
Erro while running pplacer with gtdbtk

#370 hites77 closed 4 years ago
1
more RAM will be required when use more CPUs?

#369 SilentGene opened 4 years ago
1
difficulty in installing

#368 mstambou closed 5 years ago
1
pplacer binary for macosx Mojave?

#367 jbholm opened 5 years ago
2
errors with guppy toc and large trees

#366 antgonza opened 5 years ago
4
Documentation link broken

#365 geboro opened 6 years ago
2
Dockerfile

#364 jgolob closed 6 years ago
2
unable to use pplacer in Windows environment

#363 asmagaret closed 6 years ago
1
Edges and taxonomy

#362 galud27 opened 6 years ago
0
pplacer - using multiple threads? - guppy

#361 AjitPS closed 6 years ago
1
pplacer 1.1.alpha19 or 1.1.alpha17 - BioConda - guppy - RaXML 8

#360 AjitPS opened 6 years ago
7
Compilation error

#359 cmzmasek opened 7 years ago
2
Update README.md

#358 bowmanjeffs closed 7 years ago
1
Update README.md

#357 smirarab opened 7 years ago
0
0

#356 itiago closed 7 years ago
0
Cannot run pplace with CheckM

#355 itiago closed 7 years ago
1
Is it difficult to remove the OCaml <= 4.01 requirement?

#354 wwood opened 7 years ago
4
Reference/query alignment question

#353 ghost closed 7 years ago
1
Show identity in the CSV file

#352 matsen closed 7 years ago
1
Conda support

#351 p1nox opened 7 years ago
2
binary for Mac OS X?

#350 jbloom opened 7 years ago
4
Problems during installation

#349 Lily-WL closed 8 years ago
4
Problems during installation

#348 Lily-WL closed 8 years ago
3
CSV flag not working?

#347 matsen closed 8 years ago
1
Handling of ambiguous amino acids

#346 donovan-h-parks closed 8 years ago
8
improve convexify documentation

#345 matsen opened 8 years ago
0
add swarm.py (issue #343)

#344 nhoffman closed 8 years ago
2
script for dereplication with swarm

#343 nhoffman closed 8 years ago
0
feature suggestion: weights for reference sequences

#342 nhoffman opened 8 years ago
0
reference to Archaeopteryx web site is defunct

#341 cswarth closed 8 years ago
0
"malformed row in jplace" after pplacer warning "computed function value is infinite or NaN"

#340 nhoffman closed 9 years ago
6
Classification failure

#339 matsen closed 9 years ago
0
pplacer --groups stalls in phylosift

#338 nmb85 opened 9 years ago
0
Update dependency on GSL to 1.15.3

#337 cmccoy opened 10 years ago
0
Releasing v1.1.alpha16

#336 metasoarous closed 10 years ago
0
merging with guppy

#335 Jangus2111 closed 10 years ago
2
classif_table.py undercounts read tallies after reduplication

#334 nhoffman opened 10 years ago
0
Merging via intersection for hybrids, and lots of noisy errors if sequence file and jplace are different.

#333 matsen closed 10 years ago
0